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PhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem.
Sadeqi Azer E, Rashidi Mehrabadi F, Malikić S, Li XC, Bartok O, Litchfield K, Levy R, Samuels Y, Schäffer AA, Gertz EM, Day CP, Pérez-Guijarro E, Marie K, Lee MP, Merlino G, Ergun F, Sahinalp SC. Sadeqi Azer E, et al. Among authors: ergun f. Bioinformatics. 2020 Jul 1;36(Suppl_1):i169-i176. doi: 10.1093/bioinformatics/btaa464. Bioinformatics. 2020. PMID: 32657358 Free PMC article.
Identifying uniformly mutated segments within repeats.
Sahinalp SC, Eichler E, Goldberg P, Berenbrink P, Friedetzky T, Ergun F. Sahinalp SC, et al. Among authors: ergun f. J Bioinform Comput Biol. 2004 Dec;2(4):657-68. doi: 10.1142/s0219720004000788. J Bioinform Comput Biol. 2004. PMID: 15617159
Fast intratumor heterogeneity inference from single-cell sequencing data.
Kızılkale C, Rashidi Mehrabadi F, Sadeqi Azer E, Pérez-Guijarro E, Marie KL, Lee MP, Day CP, Merlino G, Ergün F, Buluç A, Sahinalp SC, Malikić S. Kızılkale C, et al. Among authors: ergun f. Nat Comput Sci. 2022 Sep;2(9):577-583. doi: 10.1038/s43588-022-00298-x. Epub 2022 Sep 8. Nat Comput Sci. 2022. PMID: 38177468 Free PMC article.
The clinical and radiological importance of extraarticular contrast material leakage into adjacent synovial compartments on ankle MR arthrography in patients with OCD and anterolateral impingement.
Ogul H, Guzel Y, Pirimoglu B, Tuncer K, Polat G, Ergun F, Sade R, Bayraktutan U, Yuce I, Kantarci M. Ogul H, et al. Among authors: ergun f. Eur J Radiol. 2016 Oct;85(10):1857-1866. doi: 10.1016/j.ejrad.2016.08.010. Epub 2016 Aug 22. Eur J Radiol. 2016. PMID: 27666628
Massive lumbar pneumorrhachis after severe cranial trauma.
Yuce I, Akbulut A, Ergun F, Sade R, Kantarci M. Yuce I, et al. Among authors: ergun f. Spine J. 2016 Jan 1;16(1):e3. doi: 10.1016/j.spinee.2015.08.004. Epub 2015 Aug 5. Spine J. 2016. PMID: 26254566 No abstract available.
37 results