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CReSCENT: CanceR Single Cell ExpressioN Toolkit.
Mohanraj S, Díaz-Mejía JJ, Pham MD, Elrick H, Husić M, Rashid S, Luo P, Bal P, Lu K, Patel S, Mahalanabis A, Naidas A, Christensen E, Croucher D, Richards LM, Shooshtari P, Brudno M, Ramani AK, Pugh TJ. Mohanraj S, et al. Among authors: naidas a. Nucleic Acids Res. 2020 Jul 2;48(W1):W372-W379. doi: 10.1093/nar/gkaa437. Nucleic Acids Res. 2020. PMID: 32479601 Free PMC article.
Evaluation of single-cell RNAseq labelling algorithms using cancer datasets.
Christensen E, Luo P, Turinsky A, Husić M, Mahalanabis A, Naidas A, Diaz-Mejia JJ, Brudno M, Pugh T, Ramani A, Shooshtari P. Christensen E, et al. Among authors: naidas a. Brief Bioinform. 2023 Jan 19;24(1):bbac561. doi: 10.1093/bib/bbac561. Brief Bioinform. 2023. PMID: 36585784 Free PMC article.
Evaluation of single-cell RNA-seq clustering algorithms on cancer tumor datasets.
Mahalanabis A, Turinsky AL, Husić M, Christensen E, Luo P, Naidas A, Brudno M, Pugh T, Ramani AK, Shooshtari P. Mahalanabis A, et al. Among authors: naidas a. Comput Struct Biotechnol J. 2022 Oct 26;20:6375-6387. doi: 10.1016/j.csbj.2022.10.029. eCollection 2022. Comput Struct Biotechnol J. 2022. PMID: 36420149 Free PMC article.
[18F]-Fluorodeoxyglucose PET/CT imaging as a marker of carotid plaque inflammation: Comparison to immunohistology and relationship to acuity of events.
Cocker MS, Spence JD, Hammond R, deKemp RA, Lum C, Wells G, Bernick J, Hill A, Nagpal S, Stotts G, Alturkustani M, Adeeko A, Yerofeyeva Y, Rayner K, Peterson J, Khan AR, Naidas AC, Garrard L, Yaffe MJ, Leung E, Prato FS, Tardif JC, Beanlands RSB; Canadian Atherosclerosis Imaging Network (CAIN) - Project II. Cocker MS, et al. Among authors: naidas ac. Int J Cardiol. 2018 Nov 15;271:378-386. doi: 10.1016/j.ijcard.2018.05.057. Epub 2018 Jun 2. Int J Cardiol. 2018. PMID: 30007487