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Allele-aware chromosome-level genome assembly and efficient transgene-free genome editing for the autotetraploid cultivated alfalfa.
Chen H, Zeng Y, Yang Y, Huang L, Tang B, Zhang H, Hao F, Liu W, Li Y, Liu Y, Zhang X, Zhang R, Zhang Y, Li Y, Wang K, He H, Wang Z, Fan G, Yang H, Bao A, Shang Z, Chen J, Wang W, Qiu Q. Chen H, et al. Among authors: zhang r, zhang h, zhang x, zhang y. Nat Commun. 2020 May 19;11(1):2494. doi: 10.1038/s41467-020-16338-x. Nat Commun. 2020. PMID: 32427850 Free PMC article.
Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution.
Li F, Fan G, Lu C, Xiao G, Zou C, Kohel RJ, Ma Z, Shang H, Ma X, Wu J, Liang X, Huang G, Percy RG, Liu K, Yang W, Chen W, Du X, Shi C, Yuan Y, Ye W, Liu X, Zhang X, Liu W, Wei H, Wei S, Huang G, Zhang X, Zhu S, Zhang H, Sun F, Wang X, Liang J, Wang J, He Q, Huang L, Wang J, Cui J, Song G, Wang K, Xu X, Yu JZ, Zhu Y, Yu S. Li F, et al. Among authors: zhang x, zhang h. Nat Biotechnol. 2015 May;33(5):524-30. doi: 10.1038/nbt.3208. Epub 2015 Apr 20. Nat Biotechnol. 2015. PMID: 25893780
Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax).
Lamichhaney S, Fan G, Widemo F, Gunnarsson U, Thalmann DS, Hoeppner MP, Kerje S, Gustafson U, Shi C, Zhang H, Chen W, Liang X, Huang L, Wang J, Liang E, Wu Q, Lee SM, Xu X, Höglund J, Liu X, Andersson L. Lamichhaney S, et al. Among authors: zhang h. Nat Genet. 2016 Jan;48(1):84-8. doi: 10.1038/ng.3430. Epub 2015 Nov 16. Nat Genet. 2016. PMID: 26569123
The genetic architecture of floral traits in the woody plant Prunus mume.
Zhang Q, Zhang H, Sun L, Fan G, Ye M, Jiang L, Liu X, Ma K, Shi C, Bao F, Guan R, Han Y, Fu Y, Pan H, Chen Z, Li L, Wang J, Lv M, Zheng T, Yuan C, Zhou Y, Lee SM, Yan X, Xu X, Wu R, Chen W, Cheng T. Zhang Q, et al. Among authors: zhang h. Nat Commun. 2018 Apr 27;9(1):1702. doi: 10.1038/s41467-018-04093-z. Nat Commun. 2018. PMID: 29703940 Free PMC article.
Population genomic data reveal genes related to important traits of quail.
Wu Y, Zhang Y, Hou Z, Fan G, Pi J, Sun S, Chen J, Liu H, Du X, Shen J, Hu G, Chen W, Pan A, Yin P, Chen X, Pu Y, Zhang H, Liang Z, Jian J, Zhang H, Wu B, Sun J, Chen J, Tao H, Yang T, Xiao H, Yang H, Zheng C, Bai M, Fang X, Burt DW, Wang W, Li Q, Xu X, Li C, Yang H, Wang J, Yang N, Liu X, Du J. Wu Y, et al. Among authors: zhang h, zhang y. Gigascience. 2018 May 1;7(5):giy049. doi: 10.1093/gigascience/giy049. Gigascience. 2018. PMID: 29762663 Free PMC article.
Chromosome-level reference genome of the Siamese fighting fish Betta splendens, a model species for the study of aggression.
Fan G, Chan J, Ma K, Yang B, Zhang H, Yang X, Shi C, Chun-Hin Law H, Ren Z, Xu Q, Liu Q, Wang J, Chen W, Shao L, Gonçalves D, Ramos A, Cardoso SD, Guo M, Cai J, Xu X, Wang J, Yang H, Liu X, Wang Y. Fan G, et al. Among authors: zhang h. Gigascience. 2018 Nov 1;7(11):giy087. doi: 10.1093/gigascience/giy087. Gigascience. 2018. PMID: 30010754 Free PMC article.
Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil.
Zhao YP, Fan G, Yin PP, Sun S, Li N, Hong X, Hu G, Zhang H, Zhang FM, Han JD, Hao YJ, Xu Q, Yang X, Xia W, Chen W, Lin HY, Zhang R, Chen J, Zheng XM, Lee SM, Lee J, Uehara K, Wang J, Yang H, Fu CX, Liu X, Xu X, Ge S. Zhao YP, et al. Among authors: zhang fm, zhang r, zhang h. Nat Commun. 2019 Sep 13;10(1):4201. doi: 10.1038/s41467-019-12133-5. Nat Commun. 2019. PMID: 31519986 Free PMC article.
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