Lynch MDJ - Search Results

1

Time Series Resolution of the Fish Necrobiome Reveals a Decomposer Succession Involving Toxigenic Bacterial Pathogens.

Lobb B, Hodgson R, Lynch MDJ, Mansfield MJ, Cheng J, Charles TC, Neufeld JD, Craig PM, Doxey AC. Lobb B, et al. Among authors: lynch mdj. mSystems. 2020 Apr 28;5(2):e00145-20. doi: 10.1128/mSystems.00145-20. mSystems. 2020. PMID: 32345738 Free PMC article.

2

Insights into the evolutionary origins of clostridial neurotoxins from analysis of the Clostridium botulinum strain A neurotoxin gene cluster.

Doxey AC, Lynch MD, Müller KM, Meiering EM, McConkey BJ. Doxey AC, et al. BMC Evol Biol. 2008 Nov 14;8:316. doi: 10.1186/1471-2148-8-316. BMC Evol Biol. 2008. PMID: 19014598 Free PMC article.

3

Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end illumina reads.

Bartram AK, Lynch MD, Stearns JC, Moreno-Hagelsieb G, Neufeld JD. Bartram AK, et al. Appl Environ Microbiol. 2011 Jun;77(11):3846-52. doi: 10.1128/AEM.02772-10. Epub 2011 Apr 1. Appl Environ Microbiol. 2011. PMID: 21460107 Free PMC article.

4

Prevalence of anaerobic ammonium-oxidizing bacteria in contaminated groundwater.

Moore TA, Xing Y, Lazenby B, Lynch MD, Schiff S, Robertson WD, Timlin R, Lanza S, Ryan MC, Aravena R, Fortin D, Clark ID, Neufeld JD. Moore TA, et al. Environ Sci Technol. 2011 Sep 1;45(17):7217-25. doi: 10.1021/es201243t. Epub 2011 Aug 11. Environ Sci Technol. 2011. PMID: 21786759

5

Bacterial biogeography of the human digestive tract.

Stearns JC, Lynch MD, Senadheera DB, Tenenbaum HC, Goldberg MB, Cvitkovitch DG, Croitoru K, Moreno-Hagelsieb G, Neufeld JD. Stearns JC, et al. Sci Rep. 2011;1:170. doi: 10.1038/srep00170. Epub 2011 Nov 25. Sci Rep. 2011. PMID: 22355685 Free PMC article.

6

Targeted recovery of novel phylogenetic diversity from next-generation sequence data.

Lynch MD, Bartram AK, Neufeld JD. Lynch MD, et al. ISME J. 2012 Nov;6(11):2067-77. doi: 10.1038/ismej.2012.50. Epub 2012 Jul 12. ISME J. 2012. PMID: 22791239 Free PMC article.

7

AXIOME: automated exploration of microbial diversity.

Lynch MDj, Masella AP, Hall MW, Bartram AK, Neufeld JD. Lynch MDj, et al. Gigascience. 2013 Mar 13;2(1):3. doi: 10.1186/2047-217X-2-3. Gigascience. 2013. PMID: 23587322 Free PMC article.

8

Exploring links between pH and bacterial community composition in soils from the Craibstone Experimental Farm.

Bartram AK, Jiang X, Lynch MD, Masella AP, Nicol GW, Dushoff J, Neufeld JD. Bartram AK, et al. FEMS Microbiol Ecol. 2014 Feb;87(2):403-15. doi: 10.1111/1574-6941.12231. Epub 2013 Oct 25. FEMS Microbiol Ecol. 2014. PMID: 24117982 Free article.

9

Norwegian deep-water coral reefs: cultivation and molecular analysis of planktonic microbial communities.

Jensen S, Lynch MD, Ray JL, Neufeld JD, Hovland M. Jensen S, et al. Environ Microbiol. 2015 Oct;17(10):3597-609. doi: 10.1111/1462-2920.12531. Epub 2014 Jul 7. Environ Microbiol. 2015. PMID: 24911121

10

Evaluating bias of illumina-based bacterial 16S rRNA gene profiles.

Kennedy K, Hall MW, Lynch MD, Moreno-Hagelsieb G, Neufeld JD. Kennedy K, et al. Appl Environ Microbiol. 2014 Sep;80(18):5717-22. doi: 10.1128/AEM.01451-14. Epub 2014 Jul 7. Appl Environ Microbiol. 2014. PMID: 25002428 Free PMC article.

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