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Fully Automated Habenula Segmentation Provides Robust and Reliable Volume Estimation Across Large Magnetic Resonance Imaging Datasets, Suggesting Intriguing Developmental Trajectories in Psychiatric Disease.
Germann J, Gouveia FV, Martinez RCR, Zanetti MV, de Souza Duran FL, Chaim-Avancini TM, Serpa MH, Chakravarty MM, Devenyi GA. Germann J, et al. Among authors: chakravarty mm. Biol Psychiatry Cogn Neurosci Neuroimaging. 2020 Sep;5(9):923-929. doi: 10.1016/j.bpsc.2020.01.004. Epub 2020 Jan 31. Biol Psychiatry Cogn Neurosci Neuroimaging. 2020. PMID: 32222276 Free article.
Towards a validation of atlas warping techniques.
Chakravarty MM, Sadikot AF, Germann J, Bertrand G, Collins DL. Chakravarty MM, et al. Med Image Anal. 2008 Dec;12(6):713-26. doi: 10.1016/j.media.2008.04.003. Epub 2008 May 13. Med Image Anal. 2008. PMID: 18640867
Hippocampal shape alterations are associated with regional Aβ load in cognitively normal elderly individuals.
Schroeder C, Park MTM, Germann J, Chakravarty MM, Michels L, Kollias S, Kroll SL, Buck A, Treyer V, Savaskan E, Unschuld PG, Nitsch RM, Kälin AM, Hock C, Gietl AF, Leh SE. Schroeder C, et al. Among authors: chakravarty mm. Eur J Neurosci. 2017 May;45(10):1241-1251. doi: 10.1111/ejn.13408. Epub 2016 Oct 11. Eur J Neurosci. 2017. PMID: 27646656 Free article.
Manual segmentation of the fornix, fimbria, and alveus on high-resolution 3T MRI: Application via fully-automated mapping of the human memory circuit white and grey matter in healthy and pathological aging.
Amaral RSC, Park MTM, Devenyi GA, Lynn V, Pipitone J, Winterburn J, Chavez S, Schira M, Lobaugh NJ, Voineskos AN, Pruessner JC, Chakravarty MM; Alzheimer’s Disease Neuroimaging Initiative. Amaral RSC, et al. Among authors: chakravarty mm. Neuroimage. 2018 Apr 15;170:132-150. doi: 10.1016/j.neuroimage.2016.10.027. Epub 2016 Oct 18. Neuroimage. 2018. PMID: 27765611
BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods.
Gorgolewski KJ, Alfaro-Almagro F, Auer T, Bellec P, Capotă M, Chakravarty MM, Churchill NW, Cohen AL, Craddock RC, Devenyi GA, Eklund A, Esteban O, Flandin G, Ghosh SS, Guntupalli JS, Jenkinson M, Keshavan A, Kiar G, Liem F, Raamana PR, Raffelt D, Steele CJ, Quirion PO, Smith RE, Strother SC, Varoquaux G, Wang Y, Yarkoni T, Poldrack RA. Gorgolewski KJ, et al. Among authors: chakravarty mm. PLoS Comput Biol. 2017 Mar 9;13(3):e1005209. doi: 10.1371/journal.pcbi.1005209. eCollection 2017 Mar. PLoS Comput Biol. 2017. PMID: 28278228 Free PMC article.
Cerebellar anatomical alterations and attention to eyes in autism.
Laidi C, Boisgontier J, Chakravarty MM, Hotier S, d'Albis MA, Mangin JF, Devenyi GA, Delorme R, Bolognani F, Czech C, Bouquet C, Toledano E, Bouvard M, Gras D, Petit J, Mishchenko M, Gaman A, Scheid I, Leboyer M, Zalla T, Houenou J. Laidi C, et al. Among authors: chakravarty mm. Sci Rep. 2017 Sep 20;7(1):12008. doi: 10.1038/s41598-017-11883-w. Sci Rep. 2017. PMID: 28931838 Free PMC article.
323 results