Jain D - Search Results

1

Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing.

Cortés-Ciriano I, Lee JJ, Xi R, Jain D, Jung YL, Yang L, Gordenin D, Klimczak LJ, Zhang CZ, Pellman DS; PCAWG Structural Variation Working Group; Park PJ; PCAWG Consortium. Cortés-Ciriano I, et al. Among authors: jain d. Nat Genet. 2020 Mar;52(3):331-341. doi: 10.1038/s41588-019-0576-7. Epub 2020 Feb 5. Nat Genet. 2020. PMID: 32025003 Free PMC article.

2

EED, a member of the polycomb group, is required for nephron differentiation and the maintenance of nephron progenitor cells.

Zhang L, Ettou S, Khalid M, Taglienti M, Jain D, Jung YL, Seager C, Liu Y, Ng KH, Park PJ, Kreidberg JA. Zhang L, et al. Among authors: jain d. Development. 2018 Jul 18;145(14):dev157149. doi: 10.1242/dev.157149. Development. 2018. PMID: 29945864 Free PMC article.

3

HiNT: a computational method for detecting copy number variations and translocations from Hi-C data.

Wang S, Lee S, Chu C, Jain D, Kerpedjiev P, Nelson GM, Walsh JM, Alver BH, Park PJ. Wang S, et al. Among authors: jain d. Genome Biol. 2020 Mar 23;21(1):73. doi: 10.1186/s13059-020-01986-5. Genome Biol. 2020. PMID: 32293513 Free PMC article.

4

Publisher Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing.

Cortés-Ciriano I, Lee JJ, Xi R, Jain D, Jung YL, Yang L, Gordenin D, Klimczak LJ, Zhang CZ, Pellman DS; PCAWG Structural Variation Working Group; Park PJ; PCAWG Consortium. Cortés-Ciriano I, et al. Among authors: jain d. Nat Genet. 2023 May;55(5):893. doi: 10.1038/s41588-020-0634-1. Nat Genet. 2023. PMID: 32404988 Free PMC article. No abstract available.

5

Epigenetic transcriptional reprogramming by WT1 mediates a repair response during podocyte injury.

Ettou S, Jung YL, Miyoshi T, Jain D, Hiratsuka K, Schumacher V, Taglienti ME, Morizane R, Park PJ, Kreidberg JA. Ettou S, et al. Among authors: jain d. Sci Adv. 2020 Jul 24;6(30):eabb5460. doi: 10.1126/sciadv.abb5460. eCollection 2020 Jul. Sci Adv. 2020. PMID: 32754639 Free PMC article.

6

The conserved elongation factor Spn1 is required for normal transcription, histone modifications, and splicing in Saccharomyces cerevisiae.

Reim NI, Chuang J, Jain D, Alver BH, Park PJ, Winston F. Reim NI, et al. Among authors: jain d. Nucleic Acids Res. 2020 Oct 9;48(18):10241-10258. doi: 10.1093/nar/gkaa745. Nucleic Acids Res. 2020. PMID: 32941642 Free PMC article.

7

HiTea: a computational pipeline to identify non-reference transposable element insertions in Hi-C data.

Jain D, Chu C, Alver BH, Lee S, Lee EA, Park PJ. Jain D, et al. Bioinformatics. 2021 May 23;37(8):1045-1051. doi: 10.1093/bioinformatics/btaa923. Bioinformatics. 2021. PMID: 33136153 Free PMC article.

8

Essential histone chaperones collaborate to regulate transcription and chromatin integrity.

Viktorovskaya O, Chuang J, Jain D, Reim NI, López-Rivera F, Murawska M, Spatt D, Churchman LS, Park PJ, Winston F. Viktorovskaya O, et al. Among authors: jain d. Genes Dev. 2021 May 1;35(9-10):698-712. doi: 10.1101/gad.348431.121. Epub 2021 Apr 22. Genes Dev. 2021. PMID: 33888559 Free PMC article.

9

Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing.

Cortés-Ciriano I, Lee JJ, Xi R, Jain D, Jung YL, Yang L, Gordenin D, Klimczak LJ, Zhang CZ, Pellman DS; PCAWG Structural Variation Working Group; Park PJ; PCAWG Consortium. Cortés-Ciriano I, et al. Among authors: jain d. Nat Genet. 2023 Jun;55(6):1076. doi: 10.1038/s41588-023-01315-z. Nat Genet. 2023. PMID: 36944733 Free PMC article. No abstract available.

10

Epigenetic profiling reveals key genes and cis-regulatory networks specific to human parathyroids.

Jung YL, Zhao W, Li I, Jain D, Epstein CB, Bernstein BE, Parangi S, Sherwood R, Robinson-Cohen C, Hsu YH, Park PJ, Mannstadt M. Jung YL, et al. Among authors: jain d. Nat Commun. 2024 Mar 7;15(1):2106. doi: 10.1038/s41467-024-46181-3. Nat Commun. 2024. PMID: 38453887 Free PMC article.

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