DeMirci H - Search Results

1

A Structural Basis for Restricted Codon Recognition Mediated by 2-thiocytidine in tRNA Containing a Wobble Position Inosine.

Vangaveti S, Cantara WA, Spears JL, DeMirci H, Murphy FV 4th, Ranganathan SV, Sarachan KL, Agris PF. Vangaveti S, et al. Among authors: demirci h. J Mol Biol. 2020 Feb 14;432(4):913-929. doi: 10.1016/j.jmb.2019.12.016. Epub 2020 Jan 14. J Mol Biol. 2020. PMID: 31945376 Free PMC article.

2

Modification of 16S ribosomal RNA by the KsgA methyltransferase restructures the 30S subunit to optimize ribosome function.

Demirci H, Murphy F 4th, Belardinelli R, Kelley AC, Ramakrishnan V, Gregory ST, Dahlberg AE, Jogl G. Demirci H, et al. RNA. 2010 Dec;16(12):2319-24. doi: 10.1261/rna.2357210. Epub 2010 Oct 20. RNA. 2010. PMID: 20962038 Free PMC article.

3

A structural basis for streptomycin-induced misreading of the genetic code.

Demirci H, Murphy F 4th, Murphy E, Gregory ST, Dahlberg AE, Jogl G. Demirci H, et al. Nat Commun. 2013;4:1355. doi: 10.1038/ncomms2346. Nat Commun. 2013. PMID: 23322043 Free PMC article.

4

Expanded use of sense codons is regulated by modified cytidines in tRNA.

Cantara WA, Murphy FV 4th, Demirci H, Agris PF. Cantara WA, et al. Among authors: demirci h. Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):10964-9. doi: 10.1073/pnas.1222641110. Epub 2013 Jun 18. Proc Natl Acad Sci U S A. 2013. PMID: 23781103 Free PMC article.

5

The central role of protein S12 in organizing the structure of the decoding site of the ribosome.

Demirci H, Wang L, Murphy FV 4th, Murphy EL, Carr JF, Blanchard SC, Jogl G, Dahlberg AE, Gregory ST. Demirci H, et al. RNA. 2013 Dec;19(12):1791-801. doi: 10.1261/rna.040030.113. Epub 2013 Oct 23. RNA. 2013. PMID: 24152548 Free PMC article.

6

Structural analysis of base substitutions in Thermus thermophilus 16S rRNA conferring streptomycin resistance.

Demirci H, Murphy FV 4th, Murphy EL, Connetti JL, Dahlberg AE, Jogl G, Gregory ST. Demirci H, et al. Antimicrob Agents Chemother. 2014 Aug;58(8):4308-17. doi: 10.1128/AAC.02857-14. Epub 2014 May 12. Antimicrob Agents Chemother. 2014. PMID: 24820088 Free PMC article.

7

N(6)-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics.

Choi J, Ieong KW, Demirci H, Chen J, Petrov A, Prabhakar A, O'Leary SE, Dominissini D, Rechavi G, Soltis SM, Ehrenberg M, Puglisi JD. Choi J, et al. Among authors: demirci h. Nat Struct Mol Biol. 2016 Feb;23(2):110-5. doi: 10.1038/nsmb.3148. Epub 2016 Jan 11. Nat Struct Mol Biol. 2016. PMID: 26751643 Free PMC article.

8

2'-O-methylation in mRNA disrupts tRNA decoding during translation elongation.

Choi J, Indrisiunaite G, DeMirci H, Ieong KW, Wang J, Petrov A, Prabhakar A, Rechavi G, Dominissini D, He C, Ehrenberg M, Puglisi JD. Choi J, et al. Among authors: demirci h. Nat Struct Mol Biol. 2018 Mar;25(3):208-216. doi: 10.1038/s41594-018-0030-z. Epub 2018 Feb 19. Nat Struct Mol Biol. 2018. PMID: 29459784 Free PMC article.

9

Structural rearrangements in the active site of the Thermus thermophilus 16S rRNA methyltransferase KsgA in a binary complex with 5'-methylthioadenosine.

Demirci H, Belardinelli R, Seri E, Gregory ST, Gualerzi C, Dahlberg AE, Jogl G. Demirci H, et al. J Mol Biol. 2009 May 1;388(2):271-82. doi: 10.1016/j.jmb.2009.02.066. Epub 2009 Mar 12. J Mol Biol. 2009. PMID: 19285505 Free PMC article.

10

Cooperative allostery and structural dynamics of streptavidin at cryogenic- and ambient-temperature.

Ayan E, Yuksel B, Destan E, Ertem FB, Yildirim G, Eren M, Yefanov OM, Barty A, Tolstikova A, Ketawala GK, Botha S, Dao EH, Hayes B, Liang M, Seaberg MH, Hunter MS, Batyuk A, Mariani V, Su Z, Poitevin F, Yoon CH, Kupitz C, Cohen A, Doukov T, Sierra RG, Dağ Ç, DeMirci H. Ayan E, et al. Among authors: demirci h. Commun Biol. 2022 Jan 20;5(1):73. doi: 10.1038/s42003-021-02903-7. Commun Biol. 2022. PMID: 35058563 Free PMC article.

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