Chung HR - Search Results

1

Enhanced genome assembly and a new official gene set for Tribolium castaneum.

Herndon N, Shelton J, Gerischer L, Ioannidis P, Ninova M, Dönitz J, Waterhouse RM, Liang C, Damm C, Siemanowski J, Kitzmann P, Ulrich J, Dippel S, Oberhofer G, Hu Y, Schwirz J, Schacht M, Lehmann S, Montino A, Posnien N, Gurska D, Horn T, Seibert J, Vargas Jentzsch IM, Panfilio KA, Li J, Wimmer EA, Stappert D, Roth S, Schröder R, Park Y, Schoppmeier M, Chung HR, Klingler M, Kittelmann S, Friedrich M, Chen R, Altincicek B, Vilcinskas A, Zdobnov E, Griffiths-Jones S, Ronshaugen M, Stanke M, Brown SJ, Bucher G. Herndon N, et al. Among authors: chung hr. BMC Genomics. 2020 Jan 14;21(1):47. doi: 10.1186/s12864-019-6394-6. BMC Genomics. 2020. PMID: 31937263 Free PMC article.

2

Comparison of sequence-dependent tiling array normalization approaches.

Chung HR, Vingron M. Chung HR, et al. BMC Bioinformatics. 2009 Jun 30;10:204. doi: 10.1186/1471-2105-10-204. BMC Bioinformatics. 2009. PMID: 19566918 Free PMC article.

3

Genomic dissection of enhancers uncovers principles of combinatorial regulation and cell type-specific wiring of enhancer-promoter contacts.

Thormann V, Rothkegel MC, Schöpflin R, Glaser LV, Djuric P, Li N, Chung HR, Schwahn K, Vingron M, Meijsing SH. Thormann V, et al. Among authors: chung hr. Nucleic Acids Res. 2018 Apr 6;46(6):2868-2882. doi: 10.1093/nar/gky051. Nucleic Acids Res. 2018. PMID: 29385519 Free PMC article.

4

Systematic gene targeting on the X chromosome of Drosophila melanogaster.

Beinert N, Werner M, Dowe G, Chung HR, Jäckle H, Schäfer U. Beinert N, et al. Among authors: chung hr. Chromosoma. 2004 Dec;113(6):271-5. doi: 10.1007/s00412-004-0313-5. Epub 2004 Oct 12. Chromosoma. 2004. PMID: 15480728

5

Genome-wide mapping of in vivo targets of the Drosophila transcription factor Kruppel.

Matyash A, Chung HR, Jäckle H. Matyash A, et al. Among authors: chung hr. J Biol Chem. 2004 Jul 16;279(29):30689-96. doi: 10.1074/jbc.M403345200. Epub 2004 May 6. J Biol Chem. 2004. PMID: 15131112 Free article.

6

Lineage-specific expansion of the zinc finger associated domain ZAD.

Chung HR, Löhr U, Jäckle H. Chung HR, et al. Mol Biol Evol. 2007 Sep;24(9):1934-43. doi: 10.1093/molbev/msm121. Epub 2007 Jun 14. Mol Biol Evol. 2007. PMID: 17569752

7

Histone modification levels are predictive for gene expression.

Karlić R, Chung HR, Lasserre J, Vlahovicek K, Vingron M. Karlić R, et al. Among authors: chung hr. Proc Natl Acad Sci U S A. 2010 Feb 16;107(7):2926-31. doi: 10.1073/pnas.0909344107. Epub 2010 Feb 1. Proc Natl Acad Sci U S A. 2010. PMID: 20133639 Free PMC article.

8

coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers.

van Bömmel A, Love MI, Chung HR, Vingron M. van Bömmel A, et al. Among authors: chung hr. PLoS Comput Biol. 2018 Aug 24;14(8):e1006372. doi: 10.1371/journal.pcbi.1006372. eCollection 2018 Aug. PLoS Comput Biol. 2018. PMID: 30142147 Free PMC article.

9

EPIGENE: genome-wide transcription unit annotation using a multivariate probabilistic model of histone modifications.

Sahu A, Li N, Dunkel I, Chung HR. Sahu A, et al. Among authors: chung hr. Epigenetics Chromatin. 2020 Apr 7;13(1):20. doi: 10.1186/s13072-020-00341-z. Epigenetics Chromatin. 2020. PMID: 32264931 Free PMC article.

10

Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq.

Glaser LV, Steiger M, Fuchs A, van Bömmel A, Einfeldt E, Chung HR, Vingron M, Meijsing SH. Glaser LV, et al. Among authors: chung hr. Nucleic Acids Res. 2021 Dec 2;49(21):12178-12195. doi: 10.1093/nar/gkab1100. Nucleic Acids Res. 2021. PMID: 34850108 Free PMC article.

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