Risso D - Search Results

1

Orchestrating single-cell analysis with Bioconductor.

Amezquita RA, Lun ATL, Becht E, Carey VJ, Carpp LN, Geistlinger L, Marini F, Rue-Albrecht K, Risso D, Soneson C, Waldron L, Pagès H, Smith ML, Huber W, Morgan M, Gottardo R, Hicks SC. Amezquita RA, et al. Among authors: risso d. Nat Methods. 2020 Feb;17(2):137-145. doi: 10.1038/s41592-019-0654-x. Epub 2019 Dec 2. Nat Methods. 2020. PMID: 31792435 Free PMC article. Review.

2

Discontinuation of anti-epileptic therapy: a retrospective study of 86 children and adolescents.

Matricardi A, Bertamino F, Risso D. Matricardi A, et al. Among authors: risso d. Ital J Neurol Sci. 1995 Dec;16(9):613-22. doi: 10.1007/BF02230911. Ital J Neurol Sci. 1995. PMID: 8838787 Clinical Trial.

3

Normalizing single-cell RNA sequencing data: challenges and opportunities.

Vallejos CA, Risso D, Scialdone A, Dudoit S, Marioni JC. Vallejos CA, et al. Among authors: risso d. Nat Methods. 2017 Jun;14(6):565-571. doi: 10.1038/nmeth.4292. Epub 2017 May 15. Nat Methods. 2017. PMID: 28504683 Free PMC article.

4

A general and flexible method for signal extraction from single-cell RNA-seq data.

Risso D, Perraudeau F, Gribkova S, Dudoit S, Vert JP. Risso D, et al. Nat Commun. 2018 Jan 18;9(1):284. doi: 10.1038/s41467-017-02554-5. Nat Commun. 2018. PMID: 29348443 Free PMC article.

5

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications.

Van den Berge K, Perraudeau F, Soneson C, Love MI, Risso D, Vert JP, Robinson MD, Dudoit S, Clement L. Van den Berge K, et al. Among authors: risso d. Genome Biol. 2018 Feb 26;19(1):24. doi: 10.1186/s13059-018-1406-4. Genome Biol. 2018. PMID: 29478411 Free PMC article.

6

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets.

Risso D, Purvis L, Fletcher RB, Das D, Ngai J, Dudoit S, Purdom E. Risso D, et al. PLoS Comput Biol. 2018 Sep 4;14(9):e1006378. doi: 10.1371/journal.pcbi.1006378. eCollection 2018 Sep. PLoS Comput Biol. 2018. PMID: 30180157 Free PMC article.

7

Epigenetic evolution and lineage histories of chronic lymphocytic leukaemia.

Gaiti F, Chaligne R, Gu H, Brand RM, Kothen-Hill S, Schulman RC, Grigorev K, Risso D, Kim KT, Pastore A, Huang KY, Alonso A, Sheridan C, Omans ND, Biederstedt E, Clement K, Wang L, Felsenfeld JA, Bhavsar EB, Aryee MJ, Allan JN, Furman R, Gnirke A, Wu CJ, Meissner A, Landau DA. Gaiti F, et al. Among authors: risso d. Nature. 2019 May;569(7757):576-580. doi: 10.1038/s41586-019-1198-z. Epub 2019 May 15. Nature. 2019. PMID: 31092926 Free PMC article.

8

Publisher Correction: Orchestrating single-cell analysis with Bioconductor.

Amezquita RA, Lun ATL, Becht E, Carey VJ, Carpp LN, Geistlinger L, Marini F, Rue-Albrecht K, Risso D, Soneson C, Waldron L, Pagès H, Smith ML, Huber W, Morgan M, Gottardo R, Hicks SC. Amezquita RA, et al. Among authors: risso d. Nat Methods. 2020 Feb;17(2):242. doi: 10.1038/s41592-019-0700-8. Nat Methods. 2020. PMID: 31827272

9

Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data.

Calgaro M, Romualdi C, Waldron L, Risso D, Vitulo N. Calgaro M, et al. Among authors: risso d. Genome Biol. 2020 Aug 3;21(1):191. doi: 10.1186/s13059-020-02104-1. Genome Biol. 2020. PMID: 32746888 Free PMC article.

10

mbkmeans: Fast clustering for single cell data using mini-batch k-means.

Hicks SC, Liu R, Ni Y, Purdom E, Risso D. Hicks SC, et al. Among authors: risso d. PLoS Comput Biol. 2021 Jan 26;17(1):e1008625. doi: 10.1371/journal.pcbi.1008625. eCollection 2021 Jan. PLoS Comput Biol. 2021. PMID: 33497379 Free PMC article.

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