Li Y - Search Results

1

SAME-clustering: Single-cell Aggregated Clustering via Mixture Model Ensemble.

Huh R, Yang Y, Jiang Y, Shen Y, Li Y. Huh R, et al. Among authors: li y. Nucleic Acids Res. 2020 Jan 10;48(1):86-95. doi: 10.1093/nar/gkz959. Nucleic Acids Res. 2020. PMID: 31777938 Free PMC article.

2

A SNP panel and online tool for checking genotype concordance through comparing QR codes.

Du Y, Martin JS, McGee J, Yang Y, Liu EY, Sun Y, Geihs M, Kong X, Zhou EL, Li Y, Huang J. Du Y, et al. Among authors: li y. PLoS One. 2017 Sep 19;12(9):e0182438. doi: 10.1371/journal.pone.0182438. eCollection 2017. PLoS One. 2017. PMID: 28926565 Free PMC article.

3

Gene regulation in the 3D genome.

Li Y, Hu M, Shen Y. Li Y, et al. Hum Mol Genet. 2018 Aug 1;27(R2):R228-R233. doi: 10.1093/hmg/ddy164. Hum Mol Genet. 2018. PMID: 29767704 Free PMC article. Review.

4

SAFE-clustering: Single-cell Aggregated (from Ensemble) clustering for single-cell RNA-seq data.

Yang Y, Huh R, Culpepper HW, Lin Y, Love MI, Li Y. Yang Y, et al. Among authors: li y. Bioinformatics. 2019 Apr 15;35(8):1269-1277. doi: 10.1093/bioinformatics/bty793. Bioinformatics. 2019. PMID: 30202935 Free PMC article.

5

MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments.

Juric I, Yu M, Abnousi A, Raviram R, Fang R, Zhao Y, Zhang Y, Qiu Y, Yang Y, Li Y, Ren B, Hu M. Juric I, et al. Among authors: li y. PLoS Comput Biol. 2019 Apr 15;15(4):e1006982. doi: 10.1371/journal.pcbi.1006982. eCollection 2019 Apr. PLoS Comput Biol. 2019. PMID: 30986246 Free PMC article.

6

Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes.

Song M, Yang X, Ren X, Maliskova L, Li B, Jones IR, Wang C, Jacob F, Wu K, Traglia M, Tam TW, Jamieson K, Lu SY, Ming GL, Li Y, Yao J, Weiss LA, Dixon JR, Judge LM, Conklin BR, Song H, Gan L, Shen Y. Song M, et al. Among authors: li y, li b. Nat Genet. 2019 Aug;51(8):1252-1262. doi: 10.1038/s41588-019-0472-1. Epub 2019 Jul 31. Nat Genet. 2019. PMID: 31367015 Free PMC article.

7

Johnson ND, Huang L, Li R, Li Y, Yang Y, Kim HR, Grant C, Wu H, Whitsel EA, Kiel DP, Baccarelli AA, Jin P, Murabito JM, Conneely KN. Johnson ND, et al. Among authors: li y, li r. Epigenetics. 2020 Mar;15(3):294-306. doi: 10.1080/15592294.2019.1666651. Epub 2019 Sep 26. Epigenetics. 2020. PMID: 31506003 Free PMC article.

8

SCDC: bulk gene expression deconvolution by multiple single-cell RNA sequencing references.

Dong M, Thennavan A, Urrutia E, Li Y, Perou CM, Zou F, Jiang Y. Dong M, et al. Among authors: li y. Brief Bioinform. 2021 Jan 18;22(1):416-427. doi: 10.1093/bib/bbz166. Brief Bioinform. 2021. PMID: 31925417 Free PMC article.

9

Increased burden of ultra-rare structural variants localizing to boundaries of topologically associated domains in schizophrenia.

Halvorsen M, Huh R, Oskolkov N, Wen J, Netotea S, Giusti-Rodriguez P, Karlsson R, Bryois J, Nystedt B, Ameur A, Kähler AK, Ancalade N, Farrell M, Crowley JJ, Li Y, Magnusson PKE, Gyllensten U, Hultman CM, Sullivan PF, Szatkiewicz JP. Halvorsen M, et al. Among authors: li y. Nat Commun. 2020 Apr 15;11(1):1842. doi: 10.1038/s41467-020-15707-w. Nat Commun. 2020. PMID: 32296054 Free PMC article.

10

The circadian clock shapes the Arabidopsis transcriptome by regulating alternative splicing and alternative polyadenylation.

Yang Y, Li Y, Sancar A, Oztas O. Yang Y, et al. Among authors: li y. J Biol Chem. 2020 May 29;295(22):7608-7619. doi: 10.1074/jbc.RA120.013513. Epub 2020 Apr 17. J Biol Chem. 2020. PMID: 32303634 Free PMC article.

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