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Evidence of pervasive biologically functional secondary structures within the genomes of eukaryotic single-stranded DNA viruses.
Muhire BM, Golden M, Murrell B, Lefeuvre P, Lett JM, Gray A, Poon AY, Ngandu NK, Semegni Y, Tanov EP, Monjane AL, Harkins GW, Varsani A, Shepherd DN, Martin DP. Muhire BM, et al. Among authors: murrell b. J Virol. 2014 Feb;88(4):1972-89. doi: 10.1128/JVI.03031-13. Epub 2013 Nov 27. J Virol. 2014. PMID: 24284329 Free PMC article.
RELAX: detecting relaxed selection in a phylogenetic framework.
Wertheim JO, Murrell B, Smith MD, Kosakovsky Pond SL, Scheffler K. Wertheim JO, et al. Among authors: murrell b. Mol Biol Evol. 2015 Mar;32(3):820-32. doi: 10.1093/molbev/msu400. Epub 2014 Dec 23. Mol Biol Evol. 2015. PMID: 25540451 Free PMC article.
Gene-wide identification of episodic selection.
Murrell B, Weaver S, Smith MD, Wertheim JO, Murrell S, Aylward A, Eren K, Pollner T, Martin DP, Smith DM, Scheffler K, Kosakovsky Pond SL. Murrell B, et al. Among authors: murrell s. Mol Biol Evol. 2015 May;32(5):1365-71. doi: 10.1093/molbev/msv035. Epub 2015 Feb 19. Mol Biol Evol. 2015. PMID: 25701167 Free PMC article.
The genomes of many yam species contain transcriptionally active endogenous geminiviral sequences that may be functionally expressed.
Filloux D, Murrell S, Koohapitagtam M, Golden M, Julian C, Galzi S, Uzest M, Rodier-Goud M, D'Hont A, Vernerey MS, Wilkin P, Peterschmitt M, Winter S, Murrell B, Martin DP, Roumagnac P. Filloux D, et al. Among authors: murrell b, murrell s. Virus Evol. 2015 May 26;1(1):vev002. doi: 10.1093/ve/vev002. eCollection 2015. Virus Evol. 2015. PMID: 27774276 Free PMC article.
Detecting and Analyzing Genetic Recombination Using RDP4.
Martin DP, Murrell B, Khoosal A, Muhire B. Martin DP, et al. Among authors: murrell b. Methods Mol Biol. 2017;1525:433-460. doi: 10.1007/978-1-4939-6622-6_17. Methods Mol Biol. 2017. PMID: 27896731
Long-read amplicon denoising.
Kumar V, Vollbrecht T, Chernyshev M, Mohan S, Hanst B, Bavafa N, Lorenzo A, Kumar N, Ketteringham R, Eren K, Golden M, Oliveira MF, Murrell B. Kumar V, et al. Among authors: murrell b. Nucleic Acids Res. 2019 Oct 10;47(18):e104. doi: 10.1093/nar/gkz657. Nucleic Acids Res. 2019. PMID: 31418021 Free PMC article.
HyPhy 2.5-A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies.
Kosakovsky Pond SL, Poon AFY, Velazquez R, Weaver S, Hepler NL, Murrell B, Shank SD, Magalis BR, Bouvier D, Nekrutenko A, Wisotsky S, Spielman SJ, Frost SDW, Muse SV. Kosakovsky Pond SL, et al. Among authors: murrell b. Mol Biol Evol. 2020 Jan 1;37(1):295-299. doi: 10.1093/molbev/msz197. Mol Biol Evol. 2020. PMID: 31504749 Free PMC article.
118 results