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Leaf: an open-source, model-agnostic, data-driven web application for cohort discovery and translational biomedical research.
J Am Med Inform Assoc. 2020 Jan 1;27(1):109-118. doi: 10.1093/jamia/ocz165.
J Am Med Inform Assoc. 2020.
PMID: 31592524
Free PMC article.
The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment.
Haendel MA, Chute CG, Bennett TD, Eichmann DA, Guinney J, Kibbe WA, Payne PRO, Pfaff ER, Robinson PN, Saltz JH, Spratt H, Suver C, Wilbanks J, Wilcox AB, Williams AE, Wu C, Blacketer C, Bradford RL, Cimino JJ, Clark M, Colmenares EW, Francis PA, Gabriel D, Graves A, Hemadri R, Hong SS, Hripscak G, Jiao D, Klann JG, Kostka K, Lee AM, Lehmann HP, Lingrey L, Miller RT, Morris M, Murphy SN, Natarajan K, Palchuk MB, Sheikh U, Solbrig H, Visweswaran S, Walden A, Walters KM, Weber GM, Zhang XT, Zhu RL, Amor B, Girvin AT, Manna A, Qureshi N, Kurilla MG, Michael SG, Portilla LM, Rutter JL, Austin CP, Gersing KR; N3C Consortium.
Haendel MA, et al.
J Am Med Inform Assoc. 2021 Mar 1;28(3):427-443. doi: 10.1093/jamia/ocaa196.
J Am Med Inform Assoc. 2021.
PMID: 32805036
Free PMC article.
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Transferability of neural network clinical deidentification systems.
Lee K, Dobbins NJ, McInnes B, Yetisgen M, Uzuner Ö.
Lee K, et al. Among authors: dobbins nj.
J Am Med Inform Assoc. 2021 Nov 25;28(12):2661-2669. doi: 10.1093/jamia/ocab207.
J Am Med Inform Assoc. 2021.
PMID: 34586386
Free PMC article.
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A Continuously Benchmarked and Crowdsourced Challenge for Rapid Development and Evaluation of Models to Predict COVID-19 Diagnosis and Hospitalization.
Yan Y, Schaffter T, Bergquist T, Yu T, Prosser J, Aydin Z, Jabeer A, Brugere I, Gao J, Chen G, Causey J, Yao Y, Bryson K, Long DR, Jarvik JG, Lee CI, Wilcox A, Guinney J, Mooney S; DREAM Challenge Consortium.
Yan Y, et al.
JAMA Netw Open. 2021 Oct 1;4(10):e2124946. doi: 10.1001/jamanetworkopen.2021.24946.
JAMA Netw Open. 2021.
PMID: 34633425
Free PMC article.
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Extracting Patient-level Social Determinants of Health into the OMOP Common Data Model.
Phuong J, Zampino E, Dobbins N, Espinoza J, Meeker D, Spratt H, Madlock-Brown C, Weiskopf NG, Wilcox A.
Phuong J, et al.
AMIA Annu Symp Proc. 2022 Feb 21;2021:989-998. eCollection 2021.
AMIA Annu Symp Proc. 2022.
PMID: 35308947
Free PMC article.
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Leveraging natural language processing to augment structured social determinants of health data in the electronic health record.
Lybarger K, Dobbins NJ, Long R, Singh A, Wedgeworth P, Uzuner Ö, Yetisgen M.
Lybarger K, et al. Among authors: dobbins nj.
J Am Med Inform Assoc. 2023 Jul 19;30(8):1389-1397. doi: 10.1093/jamia/ocad073.
J Am Med Inform Assoc. 2023.
PMID: 37130345
Free PMC article.
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LeafAI: query generator for clinical cohort discovery rivaling a human programmer.
Dobbins NJ, Han B, Zhou W, Lan KF, Kim HN, Harrington R, Uzuner Ö, Yetisgen M.
Dobbins NJ, et al.
J Am Med Inform Assoc. 2023 Nov 17;30(12):1954-1964. doi: 10.1093/jamia/ocad149.
J Am Med Inform Assoc. 2023.
PMID: 37550244
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The Leaf Clinical Trials Corpus: a new resource for query generation from clinical trial eligibility criteria.
Dobbins NJ, Mullen T, Uzuner Ö, Yetisgen M.
Dobbins NJ, et al.
Sci Data. 2022 Aug 11;9(1):490. doi: 10.1038/s41597-022-01521-0.
Sci Data. 2022.
PMID: 35953524
Free PMC article.
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