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Page 1
An evaluation of sequencing coverage and genotyping strategies to assess neutral and adaptive diversity.
Benjelloun B, Boyer F, Streeter I, Zamani W, Engelen S, Alberti A, Alberto FJ, BenBati M, Ibnelbachyr M, Chentouf M, Bechchari A, Rezaei HR, Naderi S, Stella A, Chikhi A, Clarke L, Kijas J, Flicek P, Taberlet P, Pompanon F. Benjelloun B, et al. Among authors: flicek p. Mol Ecol Resour. 2019 Nov;19(6):1497-1515. doi: 10.1111/1755-0998.13070. Epub 2019 Sep 9. Mol Ecol Resour. 2019. PMID: 31359622 Free PMC article.
Characterizing neutral genomic diversity and selection signatures in indigenous populations of Moroccan goats (Capra hircus) using WGS data.
Benjelloun B, Alberto FJ, Streeter I, Boyer F, Coissac E, Stucki S, BenBati M, Ibnelbachyr M, Chentouf M, Bechchari A, Leempoel K, Alberti A, Engelen S, Chikhi A, Clarke L, Flicek P, Joost S, Taberlet P, Pompanon F; NextGen Consortium. Benjelloun B, et al. Among authors: flicek p. Front Genet. 2015 Apr 7;6:107. doi: 10.3389/fgene.2015.00107. eCollection 2015. Front Genet. 2015. PMID: 25904931 Free PMC article.
A global reference for human genetic variation.
1000 Genomes Project Consortium; Auton A, Brooks LD, Durbin RM, Garrison EP, Kang HM, Korbel JO, Marchini JL, McCarthy S, McVean GA, Abecasis GR. 1000 Genomes Project Consortium, et al. Nature. 2015 Oct 1;526(7571):68-74. doi: 10.1038/nature15393. Nature. 2015. PMID: 26432245 Free PMC article.
Alignment of 1000 Genomes Project reads to reference assembly GRCh38.
Zheng-Bradley X, Streeter I, Fairley S, Richardson D, Clarke L, Flicek P; 1000 Genomes Project Consortium. Zheng-Bradley X, et al. Among authors: flicek p. Gigascience. 2017 Jul 1;6(7):1-8. doi: 10.1093/gigascience/gix038. Gigascience. 2017. PMID: 28531267 Free PMC article.
Convergent genomic signatures of domestication in sheep and goats.
Alberto FJ, Boyer F, Orozco-terWengel P, Streeter I, Servin B, de Villemereuil P, Benjelloun B, Librado P, Biscarini F, Colli L, Barbato M, Zamani W, Alberti A, Engelen S, Stella A, Joost S, Ajmone-Marsan P, Negrini R, Orlando L, Rezaei HR, Naderi S, Clarke L, Flicek P, Wincker P, Coissac E, Kijas J, Tosser-Klopp G, Chikhi A, Bruford MW, Taberlet P, Pompanon F. Alberto FJ, et al. Among authors: flicek p. Nat Commun. 2018 Mar 6;9(1):813. doi: 10.1038/s41467-018-03206-y. Nat Commun. 2018. PMID: 29511174 Free PMC article.
Chromosome assembly of large and complex genomes using multiple references.
Kolmogorov M, Armstrong J, Raney BJ, Streeter I, Dunn M, Yang F, Odom D, Flicek P, Keane TM, Thybert D, Paten B, Pham S. Kolmogorov M, et al. Among authors: flicek p. Genome Res. 2018 Nov;28(11):1720-1732. doi: 10.1101/gr.236273.118. Epub 2018 Oct 19. Genome Res. 2018. PMID: 30341161 Free PMC article.
Ensembl variation resources.
Chen Y, Cunningham F, Rios D, McLaren WM, Smith J, Pritchard B, Spudich GM, Brent S, Kulesha E, Marin-Garcia P, Smedley D, Birney E, Flicek P. Chen Y, et al. Among authors: flicek p. BMC Genomics. 2010 May 11;11:293. doi: 10.1186/1471-2164-11-293. BMC Genomics. 2010. PMID: 20459805 Free PMC article.
379 results