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Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases.
Nature. 2019 May;569(7758):655-662. doi: 10.1038/s41586-019-1237-9. Epub 2019 May 29.
Nature. 2019.
PMID: 31142855
Free PMC article.
Review.
Strains, functions and dynamics in the expanded Human Microbiome Project.
Lloyd-Price J, Mahurkar A, Rahnavard G, Crabtree J, Orvis J, Hall AB, Brady A, Creasy HH, McCracken C, Giglio MG, McDonald D, Franzosa EA, Knight R, White O, Huttenhower C.
Lloyd-Price J, et al. Among authors: rahnavard g.
Nature. 2017 Oct 5;550(7674):61-66. doi: 10.1038/nature23889. Epub 2017 Sep 20.
Nature. 2017.
PMID: 28953883
Free PMC article.
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Species-level functional profiling of metagenomes and metatranscriptomes.
Franzosa EA, McIver LJ, Rahnavard G, Thompson LR, Schirmer M, Weingart G, Lipson KS, Knight R, Caporaso JG, Segata N, Huttenhower C.
Franzosa EA, et al. Among authors: rahnavard g.
Nat Methods. 2018 Nov;15(11):962-968. doi: 10.1038/s41592-018-0176-y. Epub 2018 Oct 30.
Nat Methods. 2018.
PMID: 30377376
Free PMC article.
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Host genetic variation and its microbiome interactions within the Human Microbiome Project.
Kolde R, Franzosa EA, Rahnavard G, Hall AB, Vlamakis H, Stevens C, Daly MJ, Xavier RJ, Huttenhower C.
Kolde R, et al. Among authors: rahnavard g.
Genome Med. 2018 Jan 29;10(1):6. doi: 10.1186/s13073-018-0515-8.
Genome Med. 2018.
PMID: 29378630
Free PMC article.
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A reproducible approach to high-throughput biological data acquisition and integration.
Börnigen D, Moon YS, Rahnavard G, Waldron L, McIver L, Shafquat A, Franzosa EA, Miropolsky L, Sweeney C, Morgan XC, Garrett WS, Huttenhower C.
Börnigen D, et al. Among authors: rahnavard g.
PeerJ. 2015 Mar 31;3:e791. doi: 10.7717/peerj.791. eCollection 2015.
PeerJ. 2015.
PMID: 26157642
Free PMC article.
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Erratum: Strains, functions and dynamics in the expanded Human Microbiome Project.
Lloyd-Price J, Mahurkar A, Rahnavard G, Crabtree J, Orvis J, Hall AB, Brady A, Creasy HH, McCracken C, Giglio MG, McDonald D, Franzosa EA, Knight R, White O, Huttenhower C.
Lloyd-Price J, et al. Among authors: rahnavard g.
Nature. 2017 Nov 9;551(7679):256. doi: 10.1038/nature24485. Epub 2017 Oct 12.
Nature. 2017.
PMID: 29022944
Free PMC article.
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American Gut: an Open Platform for Citizen Science Microbiome Research.
McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q; American Gut Consortium; Knight R.
McDonald D, et al. Among authors: rahnavard g.
mSystems. 2018 May 15;3(3):e00031-18. doi: 10.1128/mSystems.00031-18. eCollection 2018 May-Jun.
mSystems. 2018.
PMID: 29795809
Free PMC article.
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