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A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism.
Cooper EA, Brenton ZW, Flinn BS, Jenkins J, Shu S, Flowers D, Luo F, Wang Y, Xia P, Barry K, Daum C, Lipzen A, Yoshinaga Y, Schmutz J, Saski C, Vermerris W, Kresovich S. Cooper EA, et al. Among authors: schmutz j. BMC Genomics. 2019 May 27;20(1):420. doi: 10.1186/s12864-019-5734-x. BMC Genomics. 2019. PMID: 31133004 Free PMC article.
Quality assessment of the human genome sequence.
Schmutz J, Wheeler J, Grimwood J, Dickson M, Yang J, Caoile C, Bajorek E, Black S, Chan YM, Denys M, Escobar J, Flowers D, Fotopulos D, Garcia C, Gomez M, Gonzales E, Haydu L, Lopez F, Ramirez L, Retterer J, Rodriguez A, Rogers S, Salazar A, Tsai M, Myers RM. Schmutz J, et al. Nature. 2004 May 27;429(6990):365-8. doi: 10.1038/nature02390. Nature. 2004. PMID: 15164052
The Sorghum bicolor genome and the diversification of grasses.
Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Narechania A, Otillar RP, Penning BW, Salamov AA, Wang Y, Zhang L, Carpita NC, Freeling M, Gingle AR, Hash CT, Keller B, Klein P, Kresovich S, McCann MC, Ming R, Peterson DG, Mehboob-ur-Rahman, Ware D, Westhoff P, Mayer KF, Messing J, Rokhsar DS. Paterson AH, et al. Among authors: schmutz j. Nature. 2009 Jan 29;457(7229):551-6. doi: 10.1038/nature07723. Nature. 2009. PMID: 19189423 Free article.
Genome sequence of the palaeopolyploid soybean.
Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang XC, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA. Schmutz J, et al. Nature. 2010 Jan 14;463(7278):178-83. doi: 10.1038/nature08670. Nature. 2010. PMID: 20075913
A genome-wide survey of switchgrass genome structure and organization.
Sharma MK, Sharma R, Cao P, Jenkins J, Bartley LE, Qualls M, Grimwood J, Schmutz J, Rokhsar D, Ronald PC. Sharma MK, et al. Among authors: schmutz j. PLoS One. 2012;7(4):e33892. doi: 10.1371/journal.pone.0033892. Epub 2012 Apr 12. PLoS One. 2012. PMID: 22511929 Free PMC article.
Reference genome sequence of the model plant Setaria.
Bennetzen JL, Schmutz J, Wang H, Percifield R, Hawkins J, Pontaroli AC, Estep M, Feng L, Vaughn JN, Grimwood J, Jenkins J, Barry K, Lindquist E, Hellsten U, Deshpande S, Wang X, Wu X, Mitros T, Triplett J, Yang X, Ye CY, Mauro-Herrera M, Wang L, Li P, Sharma M, Sharma R, Ronald PC, Panaud O, Kellogg EA, Brutnell TP, Doust AN, Tuskan GA, Rokhsar D, Devos KM. Bennetzen JL, et al. Among authors: schmutz j. Nat Biotechnol. 2012 May 13;30(6):555-61. doi: 10.1038/nbt.2196. Nat Biotechnol. 2012. PMID: 22580951
The Reference Genome of the Halophytic Plant Eutrema salsugineum.
Yang R, Jarvis DE, Chen H, Beilstein MA, Grimwood J, Jenkins J, Shu S, Prochnik S, Xin M, Ma C, Schmutz J, Wing RA, Mitchell-Olds T, Schumaker KS, Wang X. Yang R, et al. Among authors: schmutz j. Front Plant Sci. 2013 Mar 21;4:46. doi: 10.3389/fpls.2013.00046. eCollection 2013. Front Plant Sci. 2013. PMID: 23518688 Free PMC article.
Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).
Mascher M, Muehlbauer GJ, Rokhsar DS, Chapman J, Schmutz J, Barry K, Muñoz-Amatriaín M, Close TJ, Wise RP, Schulman AH, Himmelbach A, Mayer KF, Scholz U, Poland JA, Stein N, Waugh R. Mascher M, et al. Among authors: schmutz j. Plant J. 2013 Nov;76(4):718-27. doi: 10.1111/tpj.12319. Epub 2013 Oct 10. Plant J. 2013. PMID: 23998490 Free PMC article.
895 results