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A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism.
Cooper EA, Brenton ZW, Flinn BS, Jenkins J, Shu S, Flowers D, Luo F, Wang Y, Xia P, Barry K, Daum C, Lipzen A, Yoshinaga Y, Schmutz J, Saski C, Vermerris W, Kresovich S. Cooper EA, et al. Among authors: daum c. BMC Genomics. 2019 May 27;20(1):420. doi: 10.1186/s12864-019-5734-x. BMC Genomics. 2019. PMID: 31133004 Free PMC article.
Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential.
Hurley JM, Dasgupta A, Emerson JM, Zhou X, Ringelberg CS, Knabe N, Lipzen AM, Lindquist EA, Daum CG, Barry KW, Grigoriev IV, Smith KM, Galagan JE, Bell-Pedersen D, Freitag M, Cheng C, Loros JJ, Dunlap JC. Hurley JM, et al. Among authors: daum cg. Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):16995-7002. doi: 10.1073/pnas.1418963111. Epub 2014 Oct 31. Proc Natl Acad Sci U S A. 2014. PMID: 25362047 Free PMC article.
Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems.
Kourist R, Bracharz F, Lorenzen J, Kracht ON, Chovatia M, Daum C, Deshpande S, Lipzen A, Nolan M, Ohm RA, Grigoriev IV, Sun S, Heitman J, Brück T, Nowrousian M. Kourist R, et al. Among authors: daum c. mBio. 2015 Jul 21;6(4):e00918. doi: 10.1128/mBio.00918-15. mBio. 2015. PMID: 26199329 Free PMC article.
Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities.
Nagy LG, Riley R, Tritt A, Adam C, Daum C, Floudas D, Sun H, Yadav JS, Pangilinan J, Larsson KH, Matsuura K, Barry K, Labutti K, Kuo R, Ohm RA, Bhattacharya SS, Shirouzu T, Yoshinaga Y, Martin FM, Grigoriev IV, Hibbett DS. Nagy LG, et al. Among authors: daum c. Mol Biol Evol. 2016 Apr;33(4):959-70. doi: 10.1093/molbev/msv337. Epub 2015 Dec 10. Mol Biol Evol. 2016. PMID: 26659563
Lineage-specific chromatin signatures reveal a regulator of lipid metabolism in microalgae.
Ngan CY, Wong CH, Choi C, Yoshinaga Y, Louie K, Jia J, Chen C, Bowen B, Cheng H, Leonelli L, Kuo R, Baran R, García-Cerdán JG, Pratap A, Wang M, Lim J, Tice H, Daum C, Xu J, Northen T, Visel A, Bristow J, Niyogi KK, Wei CL. Ngan CY, et al. Among authors: daum c. Nat Plants. 2015 Jul 27;1:15107. doi: 10.1038/nplants.2015.107. Nat Plants. 2015. PMID: 27250540
Widespread adenine N6-methylation of active genes in fungi.
Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, Clum A, Lindquist E, Daum C, Northen TR, Kunde-Ramamoorthy G, Schmitz RJ, Gryganskyi A, Culley D, Magnuson J, James TY, O'Malley MA, Stajich JE, Spatafora JW, Visel A, Grigoriev IV. Mondo SJ, et al. Among authors: daum c. Nat Genet. 2017 Jun;49(6):964-968. doi: 10.1038/ng.3859. Epub 2017 May 8. Nat Genet. 2017. PMID: 28481340
Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species.
Kjærbølling I, Vesth TC, Frisvad JC, Nybo JL, Theobald S, Kuo A, Bowyer P, Matsuda Y, Mondo S, Lyhne EK, Kogle ME, Clum A, Lipzen A, Salamov A, Ngan CY, Daum C, Chiniquy J, Barry K, LaButti K, Haridas S, Simmons BA, Magnuson JK, Mortensen UH, Larsen TO, Grigoriev IV, Baker SE, Andersen MR. Kjærbølling I, et al. Among authors: daum c. Proc Natl Acad Sci U S A. 2018 Jan 23;115(4):E753-E761. doi: 10.1073/pnas.1715954115. Epub 2018 Jan 9. Proc Natl Acad Sci U S A. 2018. PMID: 29317534 Free PMC article.
Genome Sequencing.
Yoshinaga Y, Daum C, He G, O'Malley R. Yoshinaga Y, et al. Among authors: daum c. Methods Mol Biol. 2018;1775:37-52. doi: 10.1007/978-1-4939-7804-5_4. Methods Mol Biol. 2018. PMID: 29876807
188 results