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Global population genomics of the forest pathogen Dothistroma septosporum reveal chromosome duplications in high dothistromin-producing strains.
Mol Plant Pathol. 2019 Jun;20(6):784-799. doi: 10.1111/mpp.12791. Epub 2019 Apr 1.
Mol Plant Pathol. 2019.
PMID: 30938073
Free PMC article.
Evolution of polyketide synthesis in a Dothideomycete forest pathogen.
Ozturk IK, Chettri P, Dupont PY, Barnes I, McDougal RL, Moore GG, Sim A, Bradshaw RE.
Ozturk IK, et al.
Fungal Genet Biol. 2017 Sep;106:42-50. doi: 10.1016/j.fgb.2017.07.001. Epub 2017 Jul 6.
Fungal Genet Biol. 2017.
PMID: 28690095
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Genome-wide gene expression dynamics of the fungal pathogen Dothistroma septosporum throughout its infection cycle of the gymnosperm host Pinus radiata.
Bradshaw RE, Guo Y, Sim AD, Kabir MS, Chettri P, Ozturk IK, Hunziker L, Ganley RJ, Cox MP.
Bradshaw RE, et al. Among authors: sim ad.
Mol Plant Pathol. 2016 Feb;17(2):210-24. doi: 10.1111/mpp.12273. Epub 2015 Jun 2.
Mol Plant Pathol. 2016.
PMID: 25919703
Free PMC article.
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The venom gland transcriptome of the parasitoid wasp Nasonia vitripennis highlights the importance of novel genes in venom function.
Sim AD, Wheeler D.
Sim AD, et al.
BMC Genomics. 2016 Aug 8;17:571. doi: 10.1186/s12864-016-2924-7.
BMC Genomics. 2016.
PMID: 27503142
Free PMC article.
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Small Traditional Human Communities Sustain Genomic Diversity over Microgeographic Scales despite Linguistic Isolation.
Cox MP, Hudjashov G, Sim A, Savina O, Karafet TM, Sudoyo H, Lansing JS.
Cox MP, et al.
Mol Biol Evol. 2016 Sep;33(9):2273-84. doi: 10.1093/molbev/msw099. Epub 2016 Jun 7.
Mol Biol Evol. 2016.
PMID: 27274003
Free PMC article.
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BceAB-Type Antibiotic Resistance Transporters Appear To Act by Target Protection of Cell Wall Synthesis.
Kobras CM, Piepenbreier H, Emenegger J, Sim A, Fritz G, Gebhard S.
Kobras CM, et al.
Antimicrob Agents Chemother. 2020 Feb 21;64(3):e02241-19. doi: 10.1128/AAC.02241-19. Print 2020 Feb 21.
Antimicrob Agents Chemother. 2020.
PMID: 31871088
Free PMC article.
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From Modules to Networks: a Systems-Level Analysis of the Bacitracin Stress Response in Bacillus subtilis.
Piepenbreier H, Sim A, Kobras CM, Radeck J, Mascher T, Gebhard S, Fritz G.
Piepenbreier H, et al.
mSystems. 2020 Feb 4;5(1):e00687-19. doi: 10.1128/mSystems.00687-19.
mSystems. 2020.
PMID: 32019833
Free PMC article.
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Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.
Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G, Behera AK, Gonzalez JM, Hunt T, Lagarde J, Liang CE, Li H, Jerryd Meade M, Moraga Amador DA, Prjibelski AD, Birol I, Bostan H, Brooks AM, Hasan Çelik M, Chen Y, Du MRM, Felton C, Göke J, Hafezqorani S, Herwig R, Kawaji H, Lee J, Liang Li J, Lienhard M, Mikheenko A, Mulligan D, Ming Nip K, Pertea M, Ritchie ME, Sim AD, Tang AD, Kei Wan Y, Wang C, Wong BY, Yang C, Barnes I, Berry A, Capella S, Dhillon N, Fernandez-Gonzalez JM, Ferrández-Peral L, Garcia-Reyero N, Goetz S, Hernández-Ferrer C, Kondratova L, Liu T, Martinez-Martin A, Menor C, Mestre-Tomás J, Mudge JM, Panayotova NG, Paniagua A, Repchevsky D, Rouchka E, Saint-John B, Sapena E, Sheynkman L, Laird Smith M, Suner MM, Takahashi H, Youngworth IA, Carninci P, Denslow ND, Guigó R, Hunter ME, Tilgner HU, Wold BJ, Vollmers C, Frankish A, Fai Au K, Sheynkman GM, Mortazavi A, Conesa A, Brooks AN.
Pardo-Palacios FJ, et al. Among authors: sim ad.
bioRxiv [Preprint]. 2023 Jul 27:2023.07.25.550582. doi: 10.1101/2023.07.25.550582.
bioRxiv. 2023.
PMID: 37546854
Free PMC article.
Preprint.
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