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Community structural differences shape microbial responses to high molecular weight organic matter.
Environ Microbiol. 2019 Feb;21(2):557-571. doi: 10.1111/1462-2920.14485. Epub 2018 Dec 19.
Environ Microbiol. 2019.
PMID: 30452115
Particles act as 'specialty centers' with expanded enzymatic function throughout the water column in the western North Atlantic.
Lloyd CC, Brown S, Balmonte JP, Hoarfrost A, Ghobrial S, Arnosti C.
Lloyd CC, et al. Among authors: hoarfrost a.
Front Microbiol. 2022 Sep 28;13:882333. doi: 10.3389/fmicb.2022.882333. eCollection 2022.
Front Microbiol. 2022.
PMID: 36246226
Free PMC article.
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Sequencing data discovery with MetaSeek.
Hoarfrost A, Brown N, Brown CT, Arnosti C.
Hoarfrost A, et al.
Bioinformatics. 2019 Nov 1;35(22):4857-4859. doi: 10.1093/bioinformatics/btz499.
Bioinformatics. 2019.
PMID: 31225863
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Global ecotypes in the ubiquitous marine clade SAR86.
Hoarfrost A, Nayfach S, Ladau J, Yooseph S, Arnosti C, Dupont CL, Pollard KS.
Hoarfrost A, et al.
ISME J. 2020 Jan;14(1):178-188. doi: 10.1038/s41396-019-0516-7. Epub 2019 Oct 14.
ISME J. 2020.
PMID: 31611653
Free PMC article.
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Deep learning of a bacterial and archaeal universal language of life enables transfer learning and illuminates microbial dark matter.
Hoarfrost A, Aptekmann A, Farfañuk G, Bromberg Y.
Hoarfrost A, et al.
Nat Commun. 2022 May 11;13(1):2606. doi: 10.1038/s41467-022-30070-8.
Nat Commun. 2022.
PMID: 35545619
Free PMC article.
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Anaerobic oxidation of short-chain alkanes in hydrothermal sediments: potential influences on sulfur cycling and microbial diversity.
Adams MM, Hoarfrost AL, Bose A, Joye SB, Girguis PR.
Adams MM, et al. Among authors: hoarfrost al.
Front Microbiol. 2013 May 14;4:110. doi: 10.3389/fmicb.2013.00110. eCollection 2013.
Front Microbiol. 2013.
PMID: 23717305
Free PMC article.
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Amino acid encoding for deep learning applications.
ElAbd H, Bromberg Y, Hoarfrost A, Lenz T, Franke A, Wendorff M.
ElAbd H, et al. Among authors: hoarfrost a.
BMC Bioinformatics. 2020 Jun 9;21(1):235. doi: 10.1186/s12859-020-03546-x.
BMC Bioinformatics. 2020.
PMID: 32517697
Free PMC article.
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Explainable machine learning identifies multi-omics signatures of muscle response to spaceflight in mice.
Li K, Desai R, Scott RT, Steele JR, Machado M, Demharter S, Hoarfrost A, Braun JL, Fajardo VA, Sanders LM, Costes SV.
Li K, et al. Among authors: hoarfrost a.
NPJ Microgravity. 2023 Dec 13;9(1):90. doi: 10.1038/s41526-023-00337-5.
NPJ Microgravity. 2023.
PMID: 38092777
Free PMC article.
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