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SnapperDB: a database solution for routine sequencing analysis of bacterial isolates.
Bioinformatics. 2018 Sep 1;34(17):3028-3029. doi: 10.1093/bioinformatics/bty212.
Bioinformatics. 2018.
PMID: 29659710
Free article.
Genomic determination of minimum multi-locus sequence typing schemas to represent the genomic phylogeny of Mycoplasma hominis.
Jironkin A, Brown RJ, Underwood A, Chalker VJ, Spiller OB.
Jironkin A, et al.
BMC Genomics. 2016 Nov 23;17(1):964. doi: 10.1186/s12864-016-3284-z.
BMC Genomics. 2016.
PMID: 27881098
Free PMC article.
Item in Clipboard
Genomic sequence investigation Streptococcus pyogenes clusters in England (2010-2015).
Coelho JM, Kapatai G, Jironkin A, Al-Shahib A, Daniel R, Dhami C, Laranjeira AM, Chambers T, Phillips S, Tewolde R, Underwood A, Chalker VJ.
Coelho JM, et al. Among authors: jironkin a.
Clin Microbiol Infect. 2019 Jan;25(1):96-101. doi: 10.1016/j.cmi.2018.04.011. Epub 2018 Apr 24.
Clin Microbiol Infect. 2019.
PMID: 29698817
Free article.
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Genome analysis following a national increase in Scarlet Fever in England 2014.
Chalker V, Jironkin A, Coelho J, Al-Shahib A, Platt S, Kapatai G, Daniel R, Dhami C, Laranjeira M, Chambers T, Guy R, Lamagni T, Harrison T, Chand M, Johnson AP, Underwood A; Scarlet Fever Incident Management Team.
Chalker V, et al. Among authors: jironkin a.
BMC Genomics. 2017 Mar 10;18(1):224. doi: 10.1186/s12864-017-3603-z.
BMC Genomics. 2017.
PMID: 28283023
Free PMC article.
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Wigwams: identifying gene modules co-regulated across multiple biological conditions.
Polanski K, Rhodes J, Hill C, Zhang P, Jenkins DJ, Kiddle SJ, Jironkin A, Beynon J, Buchanan-Wollaston V, Ott S, Denby KJ.
Polanski K, et al. Among authors: jironkin a.
Bioinformatics. 2014 Apr 1;30(7):962-70. doi: 10.1093/bioinformatics/btt728. Epub 2013 Dec 18.
Bioinformatics. 2014.
PMID: 24351708
Free PMC article.
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Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants.
Baxter L, Jironkin A, Hickman R, Moore J, Barrington C, Krusche P, Dyer NP, Buchanan-Wollaston V, Tiskin A, Beynon J, Denby K, Ott S.
Baxter L, et al. Among authors: jironkin a.
Plant Cell. 2012 Oct;24(10):3949-65. doi: 10.1105/tpc.112.103010. Epub 2012 Oct 30.
Plant Cell. 2012.
PMID: 23110901
Free PMC article.
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Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
Hickman R, Van Verk MC, Van Dijken AJH, Mendes MP, Vroegop-Vos IA, Caarls L, Steenbergen M, Van der Nagel I, Wesselink GJ, Jironkin A, Talbot A, Rhodes J, De Vries M, Schuurink RC, Denby K, Pieterse CMJ, Van Wees SCM.
Hickman R, et al. Among authors: jironkin a.
Plant Cell. 2017 Sep;29(9):2086-2105. doi: 10.1105/tpc.16.00958. Epub 2017 Aug 21.
Plant Cell. 2017.
PMID: 28827376
Free PMC article.
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Recombinants between Deformed wing virus and Varroa destructor virus-1 may prevail in Varroa destructor-infested honeybee colonies.
Moore J, Jironkin A, Chandler D, Burroughs N, Evans DJ, Ryabov EV.
Moore J, et al. Among authors: jironkin a.
J Gen Virol. 2011 Jan;92(Pt 1):156-61. doi: 10.1099/vir.0.025965-0. Epub 2010 Oct 6.
J Gen Virol. 2011.
PMID: 20926636
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