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Genetic variation in human drug-related genes.
Schärfe CPI, Tremmel R, Schwab M, Kohlbacher O, Marks DS. Schärfe CPI, et al. Genome Med. 2017 Dec 22;9(1):117. doi: 10.1186/s13073-017-0502-5. Genome Med. 2017. PMID: 29273096 Free PMC article.
Population-specific design of de-immunized protein biotherapeutics.
Schubert B, Schärfe C, Dönnes P, Hopf T, Marks D, Kohlbacher O. Schubert B, et al. PLoS Comput Biol. 2018 Mar 2;14(3):e1005983. doi: 10.1371/journal.pcbi.1005983. eCollection 2018 Mar. PLoS Comput Biol. 2018. PMID: 29499035 Free PMC article.
ballaxy: web services for structural bioinformatics.
Hildebrandt AK, Stöckel D, Fischer NM, de la Garza L, Krüger J, Nickels S, Röttig M, Schärfe C, Schumann M, Thiel P, Lenhof HP, Kohlbacher O, Hildebrandt A. Hildebrandt AK, et al. Bioinformatics. 2015 Jan 1;31(1):121-2. doi: 10.1093/bioinformatics/btu574. Epub 2014 Sep 2. Bioinformatics. 2015. PMID: 25183489
Structural and Functional Characterization of the Bacterial Type III Secretion Export Apparatus.
Dietsche T, Tesfazgi Mebrhatu M, Brunner MJ, Abrusci P, Yan J, Franz-Wachtel M, Schärfe C, Zilkenat S, Grin I, Galán JE, Kohlbacher O, Lea S, Macek B, Marlovits TC, Robinson CV, Wagner S. Dietsche T, et al. PLoS Pathog. 2016 Dec 15;12(12):e1006071. doi: 10.1371/journal.ppat.1006071. eCollection 2016 Dec. PLoS Pathog. 2016. PMID: 27977800 Free PMC article.
Assessment of network module identification across complex diseases.
Choobdar S, Ahsen ME, Crawford J, Tomasoni M, Fang T, Lamparter D, Lin J, Hescott B, Hu X, Mercer J, Natoli T, Narayan R; DREAM Module Identification Challenge Consortium; Subramanian A, Zhang JD, Stolovitzky G, Kutalik Z, Lage K, Slonim DK, Saez-Rodriguez J, Cowen LJ, Bergmann S, Marbach D. Choobdar S, et al. Nat Methods. 2019 Sep;16(9):843-852. doi: 10.1038/s41592-019-0509-5. Epub 2019 Aug 30. Nat Methods. 2019. PMID: 31471613 Free PMC article.
The MoSGrid Science Gateway - A Complete Solution for Molecular Simulations.
Krüger J, Grunzke R, Gesing S, Breuers S, Brinkmann A, de la Garza L, Kohlbacher O, Kruse M, Nagel WE, Packschies L, Müller-Pfefferkorn R, Schäfer P, Schärfe C, Steinke T, Schlemmer T, Warzecha KD, Zink A, Herres-Pawlis S. Krüger J, et al. J Chem Theory Comput. 2014 Jun 10;10(6):2232-45. doi: 10.1021/ct500159h. Epub 2014 May 19. J Chem Theory Comput. 2014. PMID: 26580747
ClinVAP: a reporting strategy from variants to therapeutic options.
Sürün B, Schärfe CPI, Divine MR, Heinrich J, Toussaint NC, Zimmermann L, Beha J, Kohlbacher O. Sürün B, et al. Among authors: scharfe cpi. Bioinformatics. 2020 Apr 1;36(7):2316-2317. doi: 10.1093/bioinformatics/btz924. Bioinformatics. 2020. PMID: 31830259 Free PMC article.
The EVcouplings Python framework for coevolutionary sequence analysis.
Hopf TA, Green AG, Schubert B, Mersmann S, Schärfe CPI, Ingraham JB, Toth-Petroczy A, Brock K, Riesselman AJ, Palmedo P, Kang C, Sheridan R, Draizen EJ, Dallago C, Sander C, Marks DS. Hopf TA, et al. Among authors: scharfe cpi. Bioinformatics. 2019 May 1;35(9):1582-1584. doi: 10.1093/bioinformatics/bty862. Bioinformatics. 2019. PMID: 30304492 Free PMC article.
13 results