Zuin J - Search Results

1

Regulation of the cohesin-loading factor NIPBL: Role of the lncRNA NIPBL-AS1 and identification of a distal enhancer element.

Zuin J, Casa V, Pozojevic J, Kolovos P, van den Hout MCGN, van Ijcken WFJ, Parenti I, Braunholz D, Baron Y, Watrin E, Kaiser FJ, Wendt KS. Zuin J, et al. PLoS Genet. 2017 Dec 20;13(12):e1007137. doi: 10.1371/journal.pgen.1007137. eCollection 2017 Dec. PLoS Genet. 2017. PMID: 29261648 Free PMC article.

2

Multiplexed chromosome conformation capture sequencing for rapid genome-scale high-resolution detection of long-range chromatin interactions.

Stadhouders R, Kolovos P, Brouwer R, Zuin J, van den Heuvel A, Kockx C, Palstra RJ, Wendt KS, Grosveld F, van Ijcken W, Soler E. Stadhouders R, et al. Among authors: zuin j. Nat Protoc. 2013 Mar;8(3):509-24. doi: 10.1038/nprot.2013.018. Epub 2013 Feb 14. Nat Protoc. 2013. PMID: 23411633

3

Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells.

Zuin J, Dixon JR, van der Reijden MI, Ye Z, Kolovos P, Brouwer RW, van de Corput MP, van de Werken HJ, Knoch TA, van IJcken WF, Grosveld FG, Ren B, Wendt KS. Zuin J, et al. Proc Natl Acad Sci U S A. 2014 Jan 21;111(3):996-1001. doi: 10.1073/pnas.1317788111. Epub 2013 Dec 13. Proc Natl Acad Sci U S A. 2014. PMID: 24335803 Free PMC article.

4

A cohesin-independent role for NIPBL at promoters provides insights in CdLS.

Zuin J, Franke V, van Ijcken WF, van der Sloot A, Krantz ID, van der Reijden MI, Nakato R, Lenhard B, Wendt KS. Zuin J, et al. PLoS Genet. 2014 Feb 13;10(2):e1004153. doi: 10.1371/journal.pgen.1004153. eCollection 2014 Feb. PLoS Genet. 2014. PMID: 24550742 Free PMC article.

5

Targeted Chromatin Capture (T2C): a novel high resolution high throughput method to detect genomic interactions and regulatory elements.

Kolovos P, van de Werken HJ, Kepper N, Zuin J, Brouwer RW, Kockx CE, Wendt KS, van IJcken WF, Grosveld F, Knoch TA. Kolovos P, et al. Among authors: zuin j. Epigenetics Chromatin. 2014 Jun 16;7:10. doi: 10.1186/1756-8935-7-10. eCollection 2014. Epigenetics Chromatin. 2014. PMID: 25031611 Free PMC article.

6

The detailed 3D multi-loop aggregate/rosette chromatin architecture and functional dynamic organization of the human and mouse genomes.

Knoch TA, Wachsmuth M, Kepper N, Lesnussa M, Abuseiris A, Ali Imam AM, Kolovos P, Zuin J, Kockx CEM, Brouwer RWW, van de Werken HJG, van IJcken WFJ, Wendt KS, Grosveld FG. Knoch TA, et al. Among authors: zuin j. Epigenetics Chromatin. 2016 Dec 24;9:58. doi: 10.1186/s13072-016-0089-x. eCollection 2016. Epigenetics Chromatin. 2016. PMID: 28035242 Free PMC article.

7

Investigation of the spatial structure and interactions of the genome at sub-kilobase-pair resolution using T2C.

Kolovos P, Brouwer RWW, Kockx CEM, Lesnussa M, Kepper N, Zuin J, Imam AMA, van de Werken HJG, Wendt KS, Knoch TA, van IJcken WFJ, Grosveld F. Kolovos P, et al. Among authors: zuin j. Nat Protoc. 2018 Mar;13(3):459-477. doi: 10.1038/nprot.2017.132. Epub 2018 Feb 8. Nat Protoc. 2018. PMID: 29419817

8

Nonlinear control of transcription through enhancer-promoter interactions.

Zuin J, Roth G, Zhan Y, Cramard J, Redolfi J, Piskadlo E, Mach P, Kryzhanovska M, Tihanyi G, Kohler H, Eder M, Leemans C, van Steensel B, Meister P, Smallwood S, Giorgetti L. Zuin J, et al. Nature. 2022 Apr;604(7906):571-577. doi: 10.1038/s41586-022-04570-y. Epub 2022 Apr 13. Nature. 2022. PMID: 35418676 Free PMC article.

9

Cohesin and CTCF control the dynamics of chromosome folding.

Mach P, Kos PI, Zhan Y, Cramard J, Gaudin S, Tünnermann J, Marchi E, Eglinger J, Zuin J, Kryzhanovska M, Smallwood S, Gelman L, Roth G, Nora EP, Tiana G, Giorgetti L. Mach P, et al. Among authors: zuin j. Nat Genet. 2022 Dec;54(12):1907-1918. doi: 10.1038/s41588-022-01232-7. Epub 2022 Dec 5. Nat Genet. 2022. PMID: 36471076 Free PMC article.

10

Selective haematological cancer eradication with preserved haematopoiesis.

Garaudé S, Marone R, Lepore R, Devaux A, Beerlage A, Seyres D, Dell' Aglio A, Juskevicius D, Zuin J, Burgold T, Wang S, Katta V, Manquen G, Li Y, Larrue C, Camus A, Durzynska I, Wellinger LC, Kirby I, Van Berkel PH, Kunz C, Tamburini J, Bertoni F, Widmer CC, Tsai SQ, Simonetta F, Urlinger S, Jeker LT. Garaudé S, et al. Among authors: zuin j. Nature. 2024 May 22. doi: 10.1038/s41586-024-07456-3. Online ahead of print. Nature. 2024. PMID: 38778101

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