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Page 1
Global landscape of cell envelope protein complexes in Escherichia coli.
Babu M, Bundalovic-Torma C, Calmettes C, Phanse S, Zhang Q, Jiang Y, Minic Z, Kim S, Mehla J, Gagarinova A, Rodionova I, Kumar A, Guo H, Kagan O, Pogoutse O, Aoki H, Deineko V, Caufield JH, Holtzapple E, Zhang Z, Vastermark A, Pandya Y, Lai CC, El Bakkouri M, Hooda Y, Shah M, Burnside D, Hooshyar M, Vlasblom J, Rajagopala SV, Golshani A, Wuchty S, F Greenblatt J, Saier M, Uetz P, F Moraes T, Parkinson J, Emili A. Babu M, et al. Among authors: burnside d. Nat Biotechnol. 2018 Jan;36(1):103-112. doi: 10.1038/nbt.4024. Epub 2017 Nov 27. Nat Biotechnol. 2018. PMID: 29176613 Free PMC article.
Large-scale investigation of oxygen response mutants in Saccharomyces cerevisiae.
Samanfar B, Omidi K, Hooshyar M, Laliberte B, Alamgir M, Seal AJ, Ahmed-Muhsin E, Viteri DF, Said K, Chalabian F, Golshani A, Wainer G, Burnside D, Shostak K, Bugno M, Willmore WG, Smith ML, Golshani A. Samanfar B, et al. Among authors: burnside d. Mol Biosyst. 2013 Jun;9(6):1351-9. doi: 10.1039/c3mb25516f. Epub 2013 Mar 7. Mol Biosyst. 2013. PMID: 23467670
A global investigation of gene deletion strains that affect premature stop codon bypass in yeast, Saccharomyces cerevisiae.
Samanfar B, Tan le H, Shostak K, Chalabian F, Wu Z, Alamgir M, Sunba N, Burnside D, Omidi K, Hooshyar M, Galván Márquez I, Jessulat M, Smith ML, Babu M, Azizi A, Golshani A. Samanfar B, et al. Among authors: burnside d. Mol Biosyst. 2014 Apr;10(4):916-24. doi: 10.1039/c3mb70501c. Epub 2014 Feb 18. Mol Biosyst. 2014. PMID: 24535059
Spindle Checkpoint Factors Bub1 and Bub2 Promote DNA Double-Strand Break Repair by Nonhomologous End Joining.
Jessulat M, Malty RH, Nguyen-Tran DH, Deineko V, Aoki H, Vlasblom J, Omidi K, Jin K, Minic Z, Hooshyar M, Burnside D, Samanfar B, Phanse S, Freywald T, Prasad B, Zhang Z, Vizeacoumar F, Krogan NJ, Freywald A, Golshani A, Babu M. Jessulat M, et al. Among authors: burnside d. Mol Cell Biol. 2015 Jul;35(14):2448-63. doi: 10.1128/MCB.00007-15. Epub 2015 May 11. Mol Cell Biol. 2015. PMID: 25963654 Free PMC article.
Evolution of protein-protein interaction networks in yeast.
Schoenrock A, Burnside D, Moteshareie H, Pitre S, Hooshyar M, Green JR, Golshani A, Dehne F, Wong A. Schoenrock A, et al. Among authors: burnside d. PLoS One. 2017 Mar 1;12(3):e0171920. doi: 10.1371/journal.pone.0171920. eCollection 2017. PLoS One. 2017. PMID: 28248977 Free PMC article.
Designing anti-Zika virus peptides derived from predicted human-Zika virus protein-protein interactions.
Kazmirchuk T, Dick K, Burnside DJ, Barnes B, Moteshareie H, Hajikarimlou M, Omidi K, Ahmed D, Low A, Lettl C, Hooshyar M, Schoenrock A, Pitre S, Babu M, Cassol E, Samanfar B, Wong A, Dehne F, Green JR, Golshani A. Kazmirchuk T, et al. Among authors: burnside dj. Comput Biol Chem. 2017 Dec;71:180-187. doi: 10.1016/j.compbiolchem.2017.10.011. Epub 2017 Nov 2. Comput Biol Chem. 2017. PMID: 29112936
The sensitivity of the yeast, Saccharomyces cerevisiae, to acetic acid is influenced by DOM34 and RPL36A.
Samanfar B, Shostak K, Moteshareie H, Hajikarimlou M, Shaikho S, Omidi K, Hooshyar M, Burnside D, Márquez IG, Kazmirchuk T, Naing T, Ludovico P, York-Lyon A, Szereszewski K, Leung C, Jin JY, Megarbane R, Smith ML, Babu M, Holcik M, Golshani A. Samanfar B, et al. Among authors: burnside d. PeerJ. 2017 Nov 14;5:e4037. doi: 10.7717/peerj.4037. eCollection 2017. PeerJ. 2017. PMID: 29158977 Free PMC article.
Heavy metal sensitivities of gene deletion strains for ITT1 and RPS1A connect their activities to the expression of URE2, a key gene involved in metal detoxification in yeast.
Moteshareie H, Hajikarimlou M, Mulet Indrayanti A, Burnside D, Paula Dias A, Lettl C, Ahmed D, Omidi K, Kazmirchuk T, Puchacz N, Zare N, Takallou S, Naing T, Hernández RB, Willmore WG, Babu M, McKay B, Samanfar B, Holcik M, Golshani A. Moteshareie H, et al. Among authors: burnside d. PLoS One. 2018 Sep 19;13(9):e0198704. doi: 10.1371/journal.pone.0198704. eCollection 2018. PLoS One. 2018. PMID: 30231023 Free PMC article.
41 results