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DiversePathsJ: diverse shortest paths for bioimage analysis.
Bioinformatics. 2018 Feb 1;34(3):538-540. doi: 10.1093/bioinformatics/btx621.
Bioinformatics. 2018.
PMID: 29029024
Free PMC article.
Graphical model for joint segmentation and tracking of multiple dividing cells.
Schiegg M, Hanslovsky P, Haubold C, Koethe U, Hufnagel L, Hamprecht FA.
Schiegg M, et al. Among authors: haubold c.
Bioinformatics. 2015 Mar 15;31(6):948-56. doi: 10.1093/bioinformatics/btu764. Epub 2014 Nov 17.
Bioinformatics. 2015.
PMID: 25406328
Item in Clipboard
Segmenting and Tracking Multiple Dividing Targets Using ilastik.
Haubold C, Schiegg M, Kreshuk A, Berg S, Koethe U, Hamprecht FA.
Haubold C, et al.
Adv Anat Embryol Cell Biol. 2016;219:199-229. doi: 10.1007/978-3-319-28549-8_8.
Adv Anat Embryol Cell Biol. 2016.
PMID: 27207368
Review.
Item in Clipboard
An objective comparison of cell-tracking algorithms.
Ulman V, Maška M, Magnusson KEG, Ronneberger O, Haubold C, Harder N, Matula P, Matula P, Svoboda D, Radojevic M, Smal I, Rohr K, Jaldén J, Blau HM, Dzyubachyk O, Lelieveldt B, Xiao P, Li Y, Cho SY, Dufour AC, Olivo-Marin JC, Reyes-Aldasoro CC, Solis-Lemus JA, Bensch R, Brox T, Stegmaier J, Mikut R, Wolf S, Hamprecht FA, Esteves T, Quelhas P, Demirel Ö, Malmström L, Jug F, Tomancak P, Meijering E, Muñoz-Barrutia A, Kozubek M, Ortiz-de-Solorzano C.
Ulman V, et al. Among authors: haubold c.
Nat Methods. 2017 Dec;14(12):1141-1152. doi: 10.1038/nmeth.4473. Epub 2017 Oct 30.
Nat Methods. 2017.
PMID: 29083403
Free PMC article.
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ilastik: interactive machine learning for (bio)image analysis.
Berg S, Kutra D, Kroeger T, Straehle CN, Kausler BX, Haubold C, Schiegg M, Ales J, Beier T, Rudy M, Eren K, Cervantes JI, Xu B, Beuttenmueller F, Wolny A, Zhang C, Koethe U, Hamprecht FA, Kreshuk A.
Berg S, et al. Among authors: haubold c.
Nat Methods. 2019 Dec;16(12):1226-1232. doi: 10.1038/s41592-019-0582-9. Epub 2019 Sep 30.
Nat Methods. 2019.
PMID: 31570887
Review.
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Network Flow Integer Programming to Track Elliptical Cells in Time-Lapse Sequences.
Turetken E, Wang X, Becker CJ, Haubold C, Fua P.
Turetken E, et al. Among authors: haubold c.
IEEE Trans Med Imaging. 2017 Apr;36(4):942-951. doi: 10.1109/TMI.2016.2640859. Epub 2016 Dec 15.
IEEE Trans Med Imaging. 2017.
PMID: 28029619
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Intrinsic Neuronal Activity during Migration Controls the Recruitment of Specific Interneuron Subtypes in the Postnatal Mouse Olfactory Bulb.
Bugeon S, Haubold C, Ryzynski A, Cremer H, Platel JC.
Bugeon S, et al. Among authors: haubold c.
J Neurosci. 2021 Mar 24;41(12):2630-2644. doi: 10.1523/JNEUROSCI.1960-20.2021. Epub 2021 Feb 3.
J Neurosci. 2021.
PMID: 33536198
Free PMC article.
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