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Fast online deconvolution of calcium imaging data.
Friedrich J, Zhou P, Paninski L. Friedrich J, et al. PLoS Comput Biol. 2017 Mar 14;13(3):e1005423. doi: 10.1371/journal.pcbi.1005423. eCollection 2017 Mar. PLoS Comput Biol. 2017. PMID: 28291787 Free PMC article.
Community-based benchmarking improves spike rate inference from two-photon calcium imaging data.
Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P, Gerhard S, Friedrich RW, Friedrich J, Paninski L, Pachitariu M, Harris KD, Bolte B, Machado TA, Ringach D, Stone J, Rogerson LE, Sofroniew NJ, Reimer J, Froudarakis E, Euler T, Román Rosón M, Theis L, Tolias AS, Bethge M. Berens P, et al. Among authors: friedrich rw, friedrich j. PLoS Comput Biol. 2018 May 21;14(5):e1006157. doi: 10.1371/journal.pcbi.1006157. eCollection 2018 May. PLoS Comput Biol. 2018. PMID: 29782491 Free PMC article.
CaImAn an open source tool for scalable calcium imaging data analysis.
Giovannucci A, Friedrich J, Gunn P, Kalfon J, Brown BL, Koay SA, Taxidis J, Najafi F, Gauthier JL, Zhou P, Khakh BS, Tank DW, Chklovskii DB, Pnevmatikakis EA. Giovannucci A, et al. Among authors: friedrich j. Elife. 2019 Jan 17;8:e38173. doi: 10.7554/eLife.38173. Elife. 2019. PMID: 30652683 Free PMC article.
Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.
Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, Huang YC, Campagnola L, Seeman SC, Yu J, Zheng J, Grimm JB, Patel R, Friedrich J, Mensh BD, Paninski L, Macklin JJ, Murphy GJ, Podgorski K, Lin BJ, Chen TW, Turner GC, Liu Z, Koyama M, Svoboda K, Ahrens MB, Lavis LD, Schreiter ER. Abdelfattah AS, et al. Among authors: friedrich j. Science. 2019 Aug 16;365(6454):699-704. doi: 10.1126/science.aav6416. Epub 2019 Aug 1. Science. 2019. PMID: 31371562
VolPy: Automated and scalable analysis pipelines for voltage imaging datasets.
Cai C, Friedrich J, Singh A, Eybposh MH, Pnevmatikakis EA, Podgorski K, Giovannucci A. Cai C, et al. Among authors: friedrich j. PLoS Comput Biol. 2021 Apr 14;17(4):e1008806. doi: 10.1371/journal.pcbi.1008806. eCollection 2021 Apr. PLoS Comput Biol. 2021. PMID: 33852574 Free PMC article.
834 results