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Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models.
Aite M, Chevallier M, Frioux C, Trottier C, Got J, Cortés MP, Mendoza SN, Carrier G, Dameron O, Guillaudeux N, Latorre M, Loira N, Markov GV, Maass A, Siegel A. Aite M, et al. Among authors: loira n. PLoS Comput Biol. 2018 May 23;14(5):e1006146. doi: 10.1371/journal.pcbi.1006146. eCollection 2018 May. PLoS Comput Biol. 2018. PMID: 29791443 Free PMC article.
A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism.
Hefzi H, Ang KS, Hanscho M, Bordbar A, Ruckerbauer D, Lakshmanan M, Orellana CA, Baycin-Hizal D, Huang Y, Ley D, Martinez VS, Kyriakopoulos S, Jiménez NE, Zielinski DC, Quek LE, Wulff T, Arnsdorf J, Li S, Lee JS, Paglia G, Loira N, Spahn PN, Pedersen LE, Gutierrez JM, King ZA, Lund AM, Nagarajan H, Thomas A, Abdel-Haleem AM, Zanghellini J, Kildegaard HF, Voldborg BG, Gerdtzen ZP, Betenbaugh MJ, Palsson BO, Andersen MR, Nielsen LK, Borth N, Lee DY, Lewis NE. Hefzi H, et al. Among authors: loira n. Cell Syst. 2016 Nov 23;3(5):434-443.e8. doi: 10.1016/j.cels.2016.10.020. Cell Syst. 2016. PMID: 27883890 Free PMC article.
Development of a small panel of SNPs to infer ancestry in Chileans that distinguishes Aymara and Mapuche components.
Verdugo RA, Di Genova A, Herrera L, Moraga M, Acuña M, Berríos S, Llop E, Valenzuela CY, Bustamante ML, Digman D, Symon A, Asenjo S, López P, Blanco A, Suazo J, Barozet E, Caba F, Villalón M, Alvarado S, Cáceres D, Salgado K, Portales P, Moreno-Estrada A, Gignoux CR, Sandoval K, Bustamante CD, Eng C, Huntsman S, Burchard EG, Loira N, Maass A, Cifuentes L. Verdugo RA, et al. Among authors: loira n. Biol Res. 2020 Apr 16;53(1):15. doi: 10.1186/s40659-020-00284-5. Biol Res. 2020. PMID: 32299502 Free PMC article.
The Chilean socio-ethno-genomic cline.
Barozet E, Valenzuela CY, Cifuentes L, Verdugo RA, Herrera L, Acuña M, Llop E, Moraga M, Berríos S, Di Genova A, Digman D, Symon A, Asenjo S, López P, Bustamante ML, Pezo-Valderrama P, Suazo J, Caba F, Villalón M, Alvarado S, Cáceres D, Salgado K, Portales P, Loira N, Maas A. Barozet E, et al. Among authors: loira n. Biodemography Soc Biol. 2021 Apr-Jun;66(2):156-171. doi: 10.1080/19485565.2021.1879626. Biodemography Soc Biol. 2021. PMID: 34182852