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Compressed indexing and local alignment of DNA.
Lam TW, Sung WK, Tam SL, Wong CK, Yiu SM. Lam TW, et al. Bioinformatics. 2008 Mar 15;24(6):791-7. doi: 10.1093/bioinformatics/btn032. Epub 2008 Jan 28. Bioinformatics. 2008. PMID: 18227115
Local structural alignment of RNA with affine gap model.
King-Fung Wong T, Wing-Yan Cheung B, Lam TW, Yiu SM. King-Fung Wong T, et al. Among authors: lam tw. BMC Proc. 2011 May 28;5 Suppl 2(Suppl 2):S2. doi: 10.1186/1753-6561-5-S2-S2. BMC Proc. 2011. PMID: 21554760 Free PMC article.
RNASAlign: RNA structural alignment system.
Wong TK, Wan KL, Hsu BY, Cheung BW, Hon WK, Lam TW, Yiu SM. Wong TK, et al. Among authors: lam tw. Bioinformatics. 2011 Aug 1;27(15):2151-2. doi: 10.1093/bioinformatics/btr338. Epub 2011 Jun 8. Bioinformatics. 2011. PMID: 21659321
SOAP3: ultra-fast GPU-based parallel alignment tool for short reads.
Liu CM, Wong T, Wu E, Luo R, Yiu SM, Li Y, Wang B, Yu C, Chu X, Zhao K, Li R, Lam TW. Liu CM, et al. Among authors: lam tw. Bioinformatics. 2012 Mar 15;28(6):878-9. doi: 10.1093/bioinformatics/bts061. Epub 2012 Jan 28. Bioinformatics. 2012. PMID: 22285832
SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner.
Luo R, Wong T, Zhu J, Liu CM, Zhu X, Wu E, Lee LK, Lin H, Zhu W, Cheung DW, Ting HF, Yiu SM, Peng S, Yu C, Li Y, Li R, Lam TW. Luo R, et al. Among authors: lam tw. PLoS One. 2013 May 31;8(5):e65632. doi: 10.1371/journal.pone.0065632. Print 2013. PLoS One. 2013. PMID: 23741504 Free PMC article.
Improving multiple sequence alignment by using better guide trees.
Zhan Q, Ye Y, Lam TW, Yiu SM, Wang Y, Ting HF. Zhan Q, et al. Among authors: lam tw. BMC Bioinformatics. 2015;16 Suppl 5(Suppl 5):S4. doi: 10.1186/1471-2105-16-S5-S4. Epub 2015 Mar 18. BMC Bioinformatics. 2015. PMID: 25859903 Free PMC article.
GLProbs: Aligning Multiple Sequences Adaptively.
Ye Y, Cheung DW, Wang Y, Yiu SM, Zhan Q, Lam TW, Ting HF. Ye Y, et al. Among authors: lam tw. IEEE/ACM Trans Comput Biol Bioinform. 2015 Jan-Feb;12(1):67-78. doi: 10.1109/TCBB.2014.2316820. IEEE/ACM Trans Comput Biol Bioinform. 2015. PMID: 26357079
103 results