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Toil enables reproducible, open source, big biomedical data analyses.
Nat Biotechnol. 2017 Apr 11;35(4):314-316. doi: 10.1038/nbt.3772.
Nat Biotechnol. 2017.
PMID: 28398314
Free PMC article.
No abstract available.
The NIH BD2K center for big data in translational genomics.
Paten B, Diekhans M, Druker BJ, Friend S, Guinney J, Gassner N, Guttman M, Kent WJ, Mantey P, Margolin AA, Massie M, Novak AM, Nothaft F, Pachter L, Patterson D, Smuga-Otto M, Stuart JM, Van't Veer L, Wold B, Haussler D.
Paten B, et al.
J Am Med Inform Assoc. 2015 Nov;22(6):1143-7. doi: 10.1093/jamia/ocv047. Epub 2015 Jul 13.
J Am Med Inform Assoc. 2015.
PMID: 26174866
Free PMC article.
Item in Clipboard
Mango: Exploratory Data Analysis for Large-Scale Sequencing Datasets.
Morrow AK, He GZ, Nothaft FA, Tu ET, Paschall J, Yosef N, Joseph AD.
Morrow AK, et al. Among authors: nothaft fa.
Cell Syst. 2019 Dec 18;9(6):609-613.e3. doi: 10.1016/j.cels.2019.11.002. Epub 2019 Dec 4.
Cell Syst. 2019.
PMID: 31812694
Free article.
Item in Clipboard
DECA: scalable XHMM exome copy-number variant calling with ADAM and Apache Spark.
Linderman MD, Chia D, Wallace F, Nothaft FA.
Linderman MD, et al. Among authors: nothaft fa.
BMC Bioinformatics. 2019 Oct 11;20(1):493. doi: 10.1186/s12859-019-3108-7.
BMC Bioinformatics. 2019.
PMID: 31604420
Free PMC article.
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