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BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods.
Gorgolewski KJ, Alfaro-Almagro F, Auer T, Bellec P, Capotă M, Chakravarty MM, Churchill NW, Cohen AL, Craddock RC, Devenyi GA, Eklund A, Esteban O, Flandin G, Ghosh SS, Guntupalli JS, Jenkinson M, Keshavan A, Kiar G, Liem F, Raamana PR, Raffelt D, Steele CJ, Quirion PO, Smith RE, Strother SC, Varoquaux G, Wang Y, Yarkoni T, Poldrack RA. Gorgolewski KJ, et al. Among authors: ghosh ss. PLoS Comput Biol. 2017 Mar 9;13(3):e1005209. doi: 10.1371/journal.pcbi.1005209. eCollection 2017 Mar. PLoS Comput Biol. 2017. PMID: 28278228 Free PMC article.
Data sharing in neuroimaging research.
Poline JB, Breeze JL, Ghosh S, Gorgolewski K, Halchenko YO, Hanke M, Haselgrove C, Helmer KG, Keator DB, Marcus DS, Poldrack RA, Schwartz Y, Ashburner J, Kennedy DN. Poline JB, et al. Front Neuroinform. 2012 Apr 5;6:9. doi: 10.3389/fninf.2012.00009. eCollection 2012. Front Neuroinform. 2012. PMID: 22493576 Free PMC article.
NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain.
Gorgolewski KJ, Varoquaux G, Rivera G, Schwartz Y, Sochat VV, Ghosh SS, Maumet C, Nichols TE, Poline JB, Yarkoni T, Margulies DS, Poldrack RA. Gorgolewski KJ, et al. Among authors: ghosh ss. Neuroimage. 2016 Jan 1;124(Pt B):1242-1244. doi: 10.1016/j.neuroimage.2015.04.016. Epub 2015 Apr 11. Neuroimage. 2016. PMID: 25869863 Free PMC article.
The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments.
Gorgolewski KJ, Auer T, Calhoun VD, Craddock RC, Das S, Duff EP, Flandin G, Ghosh SS, Glatard T, Halchenko YO, Handwerker DA, Hanke M, Keator D, Li X, Michael Z, Maumet C, Nichols BN, Nichols TE, Pellman J, Poline JB, Rokem A, Schaefer G, Sochat V, Triplett W, Turner JA, Varoquaux G, Poldrack RA. Gorgolewski KJ, et al. Among authors: ghosh ss. Sci Data. 2016 Jun 21;3:160044. doi: 10.1038/sdata.2016.44. Sci Data. 2016. PMID: 27326542 Free PMC article.
Sharing brain mapping statistical results with the neuroimaging data model.
Maumet C, Auer T, Bowring A, Chen G, Das S, Flandin G, Ghosh S, Glatard T, Gorgolewski KJ, Helmer KG, Jenkinson M, Keator DB, Nichols BN, Poline JB, Reynolds R, Sochat V, Turner J, Nichols TE. Maumet C, et al. Sci Data. 2016 Dec 6;3:160102. doi: 10.1038/sdata.2016.102. Sci Data. 2016. PMID: 27922621 Free PMC article.
Mindboggling morphometry of human brains.
Klein A, Ghosh SS, Bao FS, Giard J, Häme Y, Stavsky E, Lee N, Rossa B, Reuter M, Chaibub Neto E, Keshavan A. Klein A, et al. Among authors: ghosh ss. PLoS Comput Biol. 2017 Feb 23;13(2):e1005350. doi: 10.1371/journal.pcbi.1005350. eCollection 2017 Feb. PLoS Comput Biol. 2017. PMID: 28231282 Free PMC article.
The Healthy Brain Network Serial Scanning Initiative: a resource for evaluating inter-individual differences and their reliabilities across scan conditions and sessions.
O'Connor D, Potler NV, Kovacs M, Xu T, Ai L, Pellman J, Vanderwal T, Parra LC, Cohen S, Ghosh S, Escalera J, Grant-Villegas N, Osman Y, Bui A, Craddock RC, Milham MP. O'Connor D, et al. Gigascience. 2017 Feb 1;6(2):1-14. doi: 10.1093/gigascience/giw011. Gigascience. 2017. PMID: 28369458 Free PMC article.
fMRIPrep: a robust preprocessing pipeline for functional MRI.
Esteban O, Markiewicz CJ, Blair RW, Moodie CA, Isik AI, Erramuzpe A, Kent JD, Goncalves M, DuPre E, Snyder M, Oya H, Ghosh SS, Wright J, Durnez J, Poldrack RA, Gorgolewski KJ. Esteban O, et al. Among authors: ghosh ss. Nat Methods. 2019 Jan;16(1):111-116. doi: 10.1038/s41592-018-0235-4. Epub 2018 Dec 10. Nat Methods. 2019. PMID: 30532080 Free PMC article.
333 results