Chu LF - Search Results

1

Mouse Tmem135 mutation reveals a mechanism involving mitochondrial dynamics that leads to age-dependent retinal pathologies.

Lee WH, Higuchi H, Ikeda S, Macke EL, Takimoto T, Pattnaik BR, Liu C, Chu LF, Siepka SM, Krentz KJ, Rubinstein CD, Kalejta RF, Thomson JA, Mullins RF, Takahashi JS, Pinto LH, Ikeda A. Lee WH, et al. Among authors: chu lf. Elife. 2016 Nov 15;5:e19264. doi: 10.7554/eLife.19264. Elife. 2016. PMID: 27863209 Free PMC article.

2

Comparative RNA-seq analysis in the unsequenced axolotl: the oncogene burst highlights early gene expression in the blastema.

Stewart R, Rascón CA, Tian S, Nie J, Barry C, Chu LF, Ardalani H, Wagner RJ, Probasco MD, Bolin JM, Leng N, Sengupta S, Volkmer M, Habermann B, Tanaka EM, Thomson JA, Dewey CN. Stewart R, et al. Among authors: chu lf. PLoS Comput Biol. 2013;9(3):e1002936. doi: 10.1371/journal.pcbi.1002936. Epub 2013 Mar 7. PLoS Comput Biol. 2013. PMID: 23505351 Free PMC article.

3

Efficient genome engineering in human pluripotent stem cells using Cas9 from Neisseria meningitidis.

Hou Z, Zhang Y, Propson NE, Howden SE, Chu LF, Sontheimer EJ, Thomson JA. Hou Z, et al. Among authors: chu lf. Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15644-9. doi: 10.1073/pnas.1313587110. Epub 2013 Aug 12. Proc Natl Acad Sci U S A. 2013. PMID: 23940360 Free PMC article.

4

An expandable, inducible hemangioblast state regulated by fibroblast growth factor.

Vereide DT, Vickerman V, Swanson SA, Chu LF, McIntosh BE, Thomson JA. Vereide DT, et al. Among authors: chu lf. Stem Cell Reports. 2014 Dec 9;3(6):1043-57. doi: 10.1016/j.stemcr.2014.10.003. Epub 2014 Nov 13. Stem Cell Reports. 2014. PMID: 25458896 Free PMC article.

5

Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments.

Leng N, Chu LF, Barry C, Li Y, Choi J, Li X, Jiang P, Stewart RM, Thomson JA, Kendziorski C. Leng N, et al. Among authors: chu lf. Nat Methods. 2015 Oct;12(10):947-950. doi: 10.1038/nmeth.3549. Epub 2015 Aug 24. Nat Methods. 2015. PMID: 26301841 Free PMC article.

6

OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data.

Leng N, Choi J, Chu LF, Thomson JA, Kendziorski C, Stewart R. Leng N, et al. Among authors: chu lf. Bioinformatics. 2016 May 1;32(9):1408-10. doi: 10.1093/bioinformatics/btw004. Epub 2016 Jan 6. Bioinformatics. 2016. PMID: 26743507 Free PMC article.

7

Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm.

Chu LF, Leng N, Zhang J, Hou Z, Mamott D, Vereide DT, Choi J, Kendziorski C, Stewart R, Thomson JA. Chu LF, et al. Genome Biol. 2016 Aug 17;17(1):173. doi: 10.1186/s13059-016-1033-x. Genome Biol. 2016. PMID: 27534536 Free PMC article.

8

A statistical approach for identifying differential distributions in single-cell RNA-seq experiments.

Korthauer KD, Chu LF, Newton MA, Li Y, Thomson J, Stewart R, Kendziorski C. Korthauer KD, et al. Among authors: chu lf. Genome Biol. 2016 Oct 25;17(1):222. doi: 10.1186/s13059-016-1077-y. Genome Biol. 2016. PMID: 27782827 Free PMC article.

9

SCnorm: robust normalization of single-cell RNA-seq data.

Bacher R, Chu LF, Leng N, Gasch AP, Thomson JA, Stewart RM, Newton M, Kendziorski C. Bacher R, et al. Among authors: chu lf. Nat Methods. 2017 Jun;14(6):584-586. doi: 10.1038/nmeth.4263. Epub 2017 Apr 17. Nat Methods. 2017. PMID: 28418000 Free PMC article.

10

A Novel Approach to Single Cell RNA-Sequence Analysis Facilitates In Silico Gene Reporting of Human Pluripotent Stem Cell-Derived Retinal Cell Types.

Phillips MJ, Jiang P, Howden S, Barney P, Min J, York NW, Chu LF, Capowski EE, Cash A, Jain S, Barlow K, Tabassum T, Stewart R, Pattnaik BR, Thomson JA, Gamm DM. Phillips MJ, et al. Among authors: chu lf. Stem Cells. 2018 Mar;36(3):313-324. doi: 10.1002/stem.2755. Epub 2017 Dec 25. Stem Cells. 2018. PMID: 29230913 Free PMC article.

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