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Resurrecting ancestral structural dynamics of an antiviral immune receptor: adaptive binding pocket reorganization repeatedly shifts RNA preference.
BMC Evol Biol. 2016 Nov 8;16(1):241. doi: 10.1186/s12862-016-0818-6.
BMC Evol Biol. 2016.
PMID: 27825296
Free PMC article.
Evolution of a Novel Antiviral Immune-Signaling Interaction by Partial-Gene Duplication.
Korithoski B, Kolaczkowski O, Mukherjee K, Kola R, Earl C, Kolaczkowski B.
Korithoski B, et al. Among authors: kolaczkowski o.
PLoS One. 2015 Sep 10;10(9):e0137276. doi: 10.1371/journal.pone.0137276. eCollection 2015.
PLoS One. 2015.
PMID: 26356745
Free PMC article.
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Convergence of Domain Architecture, Structure, and Ligand Affinity in Animal and Plant RNA-Binding Proteins.
Dias R, Manny A, Kolaczkowski O, Kolaczkowski B.
Dias R, et al. Among authors: kolaczkowski o.
Mol Biol Evol. 2017 Jun 1;34(6):1429-1444. doi: 10.1093/molbev/msx090.
Mol Biol Evol. 2017.
PMID: 28333205
Free PMC article.
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Increased Affinity for RNA Targets Evolved Early in Animal and Plant Dicer Lineages through Different Structural Mechanisms.
Jia H, Kolaczkowski O, Rolland J, Kolaczkowski B.
Jia H, et al. Among authors: kolaczkowski o.
Mol Biol Evol. 2017 Dec 1;34(12):3047-3063. doi: 10.1093/molbev/msx187.
Mol Biol Evol. 2017.
PMID: 29106606
Free PMC article.
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Dicer cleaves 5'-extended microRNA precursors originating from RNA polymerase II transcription start sites.
Sheng P, Fields C, Aadland K, Wei T, Kolaczkowski O, Gu T, Kolaczkowski B, Xie M.
Sheng P, et al. Among authors: kolaczkowski o.
Nucleic Acids Res. 2018 Jun 20;46(11):5737-5752. doi: 10.1093/nar/gky306.
Nucleic Acids Res. 2018.
PMID: 29746670
Free PMC article.
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Direct Molecular Evidence for an Ancient, Conserved Developmental Toolkit Controlling Posttranscriptional Gene Regulation in Land Plants.
Jia H, Aadland K, Kolaczkowski O, Kolaczkowski B.
Jia H, et al. Among authors: kolaczkowski o.
Mol Biol Evol. 2021 Oct 27;38(11):4765-4777. doi: 10.1093/molbev/msab201.
Mol Biol Evol. 2021.
PMID: 34196710
Free PMC article.
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