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An integrative in-silico approach for therapeutic target identification in the human pathogen Corynebacterium diphtheriae.
Jamal SB, Hassan SS, Tiwari S, Viana MV, Benevides LJ, Ullah A, Turjanski AG, Barh D, Ghosh P, Costa DA, Silva A, Röttger R, Baumbach J, Azevedo VAC. Jamal SB, et al. Among authors: benevides lj. PLoS One. 2017 Oct 19;12(10):e0186401. doi: 10.1371/journal.pone.0186401. eCollection 2017. PLoS One. 2017. PMID: 29049350 Free PMC article.
Genome Sequence of Corynebacterium ulcerans Strain FRC11.
Benevides Lde J, Viana MV, Mariano DC, Rocha Fde S, Bagano PC, Folador EL, Pereira FL, Dorella FA, Leal CA, Carvalho AF, Soares Sde C, Carneiro A, Ramos R, Badell-Ocando E, Guiso N, Silva A, Figueiredo H, Azevedo V, Guimarães LC. Benevides Lde J, et al. Genome Announc. 2015 Mar 12;3(2):e00112-15. doi: 10.1128/genomeA.00112-15. Genome Announc. 2015. PMID: 25767241 Free PMC article.
Complete genome sequence of Streptococcus agalactiae strain GBS85147 serotype of type Ia isolated from human oropharynx.
de Aguiar EL, Mariano DC, Viana MV, Benevides Lde J, de Souza Rocha F, de Castro Oliveira L, Pereira FL, Dorella FA, Leal CA, de Carvalho AF, Santos GS, Mattos-Guaraldi AL, Nagao PE, de Castro Soares S, Hassan SS, Pinto AC, Figueiredo HC, Azevedo V. de Aguiar EL, et al. Stand Genomic Sci. 2016 Jun 3;11:39. doi: 10.1186/s40793-016-0158-6. eCollection 2016. Stand Genomic Sci. 2016. PMID: 27274785 Free PMC article.
Comparative genomics of Bordetella pertussis and prediction of new vaccines and drug targets.
Felice AG, Santos LNQ, Kolossowski I, Zen FL, Alves LG, Rodrigues TCV, Prado LCS, Jaiswal AK, Tiwari S, Miranda FM, Ramos RTJ, Azevedo V, Oliveira CJF, Benevides LJ, Soares SC. Felice AG, et al. Among authors: benevides lj. J Biomol Struct Dyn. 2022;40(20):10136-10152. doi: 10.1080/07391102.2021.1940279. Epub 2021 Jun 22. J Biomol Struct Dyn. 2022. PMID: 34155952
Pan-genomic analyses of 47 complete genomes of the Rickettsia genus and prediction of new vaccine targets and virulence factors of the species.
Felice AG, Alves LG, Freitas ASF, Rodrigues TCV, Jaiswal AK, Tiwari S, Gomes LGR, Miranda FM, Ramos RTJ, Azevedo V, Oliveira LC, Oliveira CJ, Soares SDC, Benevides LJ. Felice AG, et al. Among authors: benevides lj. J Biomol Struct Dyn. 2022 Oct;40(16):7496-7510. doi: 10.1080/07391102.2021.1898473. Epub 2021 Mar 15. J Biomol Struct Dyn. 2022. PMID: 33719856
Analyses of the probiotic property and stress resistance-related genes of Lactococcus lactis subsp. lactis NCDO 2118 through comparative genomics and in vitro assays.
Oliveira LC, Saraiva TD, Silva WM, Pereira UP, Campos BC, Benevides LJ, Rocha FS, Figueiredo HC, Azevedo V, Soares SC. Oliveira LC, et al. Among authors: benevides lj. PLoS One. 2017 Apr 6;12(4):e0175116. doi: 10.1371/journal.pone.0175116. eCollection 2017. PLoS One. 2017. PMID: 28384209 Free PMC article.
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