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Simultaneous gene finding in multiple genomes.
Bioinformatics. 2016 Nov 15;32(22):3388-3395. doi: 10.1093/bioinformatics/btw494. Epub 2016 Jul 27.
Bioinformatics. 2016.
PMID: 27466621
Free PMC article.
Comparative Genome Annotation.
König S, Romoth L, Stanke M.
König S, et al.
Methods Mol Biol. 2018;1704:189-212. doi: 10.1007/978-1-4939-7463-4_6.
Methods Mol Biol. 2018.
PMID: 29277866
Review.
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Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci.
Lilue J, Doran AG, Fiddes IT, Abrudan M, Armstrong J, Bennett R, Chow W, Collins J, Collins S, Czechanski A, Danecek P, Diekhans M, Dolle DD, Dunn M, Durbin R, Earl D, Ferguson-Smith A, Flicek P, Flint J, Frankish A, Fu B, Gerstein M, Gilbert J, Goodstadt L, Harrow J, Howe K, Ibarra-Soria X, Kolmogorov M, Lelliott CJ, Logan DW, Loveland J, Mathews CE, Mott R, Muir P, Nachtweide S, Navarro FCP, Odom DT, Park N, Pelan S, Pham SK, Quail M, Reinholdt L, Romoth L, Shirley L, Sisu C, Sjoberg-Herrera M, Stanke M, Steward C, Thomas M, Threadgold G, Thybert D, Torrance J, Wong K, Wood J, Yalcin B, Yang F, Adams DJ, Paten B, Keane TM.
Lilue J, et al.
Nat Genet. 2018 Nov;50(11):1574-1583. doi: 10.1038/s41588-018-0223-8. Epub 2018 Oct 1.
Nat Genet. 2018.
PMID: 30275530
Free PMC article.
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The genomic basis of evolutionary differentiation among honey bees.
Fouks B, Brand P, Nguyen HN, Herman J, Camara F, Ence D, Hagen DE, Hoff KJ, Nachweide S, Romoth L, Walden KKO, Guigo R, Stanke M, Narzisi G, Yandell M, Robertson HM, Koeniger N, Chantawannakul P, Schatz MC, Worley KC, Robinson GE, Elsik CG, Rueppell O.
Fouks B, et al.
Genome Res. 2021 Jul;31(7):1203-1215. doi: 10.1101/gr.272310.120. Epub 2021 May 4.
Genome Res. 2021.
PMID: 33947700
Free PMC article.
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