Stajich JE - Search Results

1

Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles.

Castanera R, López-Varas L, Borgognone A, LaButti K, Lapidus A, Schmutz J, Grimwood J, Pérez G, Pisabarro AG, Grigoriev IV, Stajich JE, Ramírez L. Castanera R, et al. Among authors: stajich je. PLoS Genet. 2016 Jun 13;12(6):e1006108. doi: 10.1371/journal.pgen.1006108. eCollection 2016 Jun. PLoS Genet. 2016. PMID: 27294409 Free PMC article.

2

Genome sequence of the model mushroom Schizophyllum commune.

Ohm RA, de Jong JF, Lugones LG, Aerts A, Kothe E, Stajich JE, de Vries RP, Record E, Levasseur A, Baker SE, Bartholomew KA, Coutinho PM, Erdmann S, Fowler TJ, Gathman AC, Lombard V, Henrissat B, Knabe N, Kües U, Lilly WW, Lindquist E, Lucas S, Magnuson JK, Piumi F, Raudaskoski M, Salamov A, Schmutz J, Schwarze FW, vanKuyk PA, Horton JS, Grigoriev IV, Wösten HA. Ohm RA, et al. Among authors: stajich je. Nat Biotechnol. 2010 Sep;28(9):957-63. doi: 10.1038/nbt.1643. Epub 2010 Jul 11. Nat Biotechnol. 2010. PMID: 20622885

3

Massive changes in genome architecture accompany the transition to self-fertility in the filamentous fungus Neurospora tetrasperma.

Ellison CE, Stajich JE, Jacobson DJ, Natvig DO, Lapidus A, Foster B, Aerts A, Riley R, Lindquist EA, Grigoriev IV, Taylor JW. Ellison CE, et al. Among authors: stajich je. Genetics. 2011 Sep;189(1):55-69. doi: 10.1534/genetics.111.130690. Epub 2011 Jul 12. Genetics. 2011. PMID: 21750257 Free PMC article.

4

The use of RelocaTE and unassembled short reads to produce high-resolution snapshots of transposable element generated diversity in rice.

Robb SM, Lu L, Valencia E, Burnette JM 3rd, Okumoto Y, Wessler SR, Stajich JE. Robb SM, et al. Among authors: stajich je. G3 (Bethesda). 2013 Jun 21;3(6):949-57. doi: 10.1534/g3.112.005348. G3 (Bethesda). 2013. PMID: 23576519 Free PMC article.

5

A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data.

Spatafora JW, Chang Y, Benny GL, Lazarus K, Smith ME, Berbee ML, Bonito G, Corradi N, Grigoriev I, Gryganskyi A, James TY, O'Donnell K, Roberson RW, Taylor TN, Uehling J, Vilgalys R, White MM, Stajich JE. Spatafora JW, et al. Among authors: stajich je. Mycologia. 2016 Sep;108(5):1028-1046. doi: 10.3852/16-042. Mycologia. 2016. PMID: 27738200 Free PMC article.

6

Widespread adenine N6-methylation of active genes in fungi.

Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, Clum A, Lindquist E, Daum C, Northen TR, Kunde-Ramamoorthy G, Schmitz RJ, Gryganskyi A, Culley D, Magnuson J, James TY, O'Malley MA, Stajich JE, Spatafora JW, Visel A, Grigoriev IV. Mondo SJ, et al. Among authors: stajich je. Nat Genet. 2017 Jun;49(6):964-968. doi: 10.1038/ng.3859. Epub 2017 May 8. Nat Genet. 2017. PMID: 28481340

7

Fungal Genomes and Insights into the Evolution of the Kingdom.

Stajich JE. Stajich JE. Microbiol Spectr. 2017 Jul;5(4):10.1128/microbiolspec.FUNK-0055-2016. doi: 10.1128/microbiolspec.FUNK-0055-2016. Microbiol Spectr. 2017. PMID: 28820125 Free PMC article.

8

The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies.

Spatafora JW, Aime MC, Grigoriev IV, Martin F, Stajich JE, Blackwell M. Spatafora JW, et al. Among authors: stajich je. Microbiol Spectr. 2017 Sep;5(5). doi: 10.1128/microbiolspec.FUNK-0053-2016. Microbiol Spectr. 2017. PMID: 28917057 Free article. Review.

9

Tracking the genome-wide outcomes of a transposable element burst over decades of amplification.

Lu L, Chen J, Robb SMC, Okumoto Y, Stajich JE, Wessler SR. Lu L, et al. Among authors: stajich je. Proc Natl Acad Sci U S A. 2017 Dec 5;114(49):E10550-E10559. doi: 10.1073/pnas.1716459114. Epub 2017 Nov 20. Proc Natl Acad Sci U S A. 2017. PMID: 29158416 Free PMC article.

10

Early Diverging Insect-Pathogenic Fungi of the Order Entomophthorales Possess Diverse and Unique Subtilisin-Like Serine Proteases.

Arnesen JA, Małagocka J, Gryganskyi A, Grigoriev IV, Voigt K, Stajich JE, De Fine Licht HH. Arnesen JA, et al. Among authors: stajich je. G3 (Bethesda). 2018 Oct 3;8(10):3311-3319. doi: 10.1534/g3.118.200656. G3 (Bethesda). 2018. PMID: 30111619 Free PMC article.

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