Prins JF - Search Results

1

SLICER: inferring branched, nonlinear cellular trajectories from single cell RNA-seq data.

Welch JD, Hartemink AJ, Prins JF. Welch JD, et al. Among authors: prins jf. Genome Biol. 2016 May 23;17(1):106. doi: 10.1186/s13059-016-0975-3. Genome Biol. 2016. PMID: 27215581 Free PMC article.

2

Robust detection of alternative splicing in a population of single cells.

Welch JD, Hu Y, Prins JF. Welch JD, et al. Among authors: prins jf. Nucleic Acids Res. 2016 May 5;44(8):e73. doi: 10.1093/nar/gkv1525. Epub 2016 Jan 5. Nucleic Acids Res. 2016. PMID: 26740580 Free PMC article.

3

Selective single cell isolation for genomics using microraft arrays.

Welch JD, Williams LA, DiSalvo M, Brandt AT, Marayati R, Sims CE, Allbritton NL, Prins JF, Yeh JJ, Jones CD. Welch JD, et al. Among authors: prins jf. Nucleic Acids Res. 2016 Sep 30;44(17):8292-301. doi: 10.1093/nar/gkw700. Epub 2016 Aug 16. Nucleic Acids Res. 2016. PMID: 27530426 Free PMC article.

4

MATCHER: manifold alignment reveals correspondence between single cell transcriptome and epigenome dynamics.

Welch JD, Hartemink AJ, Prins JF. Welch JD, et al. Among authors: prins jf. Genome Biol. 2017 Jul 24;18(1):138. doi: 10.1186/s13059-017-1269-0. Genome Biol. 2017. PMID: 28738873 Free PMC article.

5

Pseudogenes transcribed in breast invasive carcinoma show subtype-specific expression and ceRNA potential.

Welch JD, Baran-Gale J, Perou CM, Sethupathy P, Prins JF. Welch JD, et al. Among authors: prins jf. BMC Genomics. 2015 Feb 22;16(1):113. doi: 10.1186/s12864-015-1227-8. BMC Genomics. 2015. PMID: 25765044 Free PMC article.

6

EnD-Seq and AppEnD: sequencing 3' ends to identify nontemplated tails and degradation intermediates.

Welch JD, Slevin MK, Tatomer DC, Duronio RJ, Prins JF, Marzluff WF. Welch JD, et al. Among authors: prins jf. RNA. 2015 Jul;21(7):1375-89. doi: 10.1261/rna.048785.114. Epub 2015 May 26. RNA. 2015. PMID: 26015596 Free PMC article.

7

Single-cell transcriptomics reconstructs fate conversion from fibroblast to cardiomyocyte.

Liu Z, Wang L, Welch JD, Ma H, Zhou Y, Vaseghi HR, Yu S, Wall JB, Alimohamadi S, Zheng M, Yin C, Shen W, Prins JF, Liu J, Qian L. Liu Z, et al. Among authors: prins jf. Nature. 2017 Nov 2;551(7678):100-104. doi: 10.1038/nature24454. Epub 2017 Oct 25. Nature. 2017. PMID: 29072293 Free PMC article.

8

Single-Cell Transcriptomic Analyses of Cell Fate Transitions during Human Cardiac Reprogramming.

Zhou Y, Liu Z, Welch JD, Gao X, Wang L, Garbutt T, Keepers B, Ma H, Prins JF, Shen W, Liu J, Qian L. Zhou Y, et al. Among authors: prins jf. Cell Stem Cell. 2019 Jul 3;25(1):149-164.e9. doi: 10.1016/j.stem.2019.05.020. Epub 2019 Jun 20. Cell Stem Cell. 2019. PMID: 31230860 Free PMC article.

9

Deep sequencing shows multiple oligouridylations are required for 3' to 5' degradation of histone mRNAs on polyribosomes.

Slevin MK, Meaux S, Welch JD, Bigler R, Miliani de Marval PL, Su W, Rhoads RE, Prins JF, Marzluff WF. Slevin MK, et al. Among authors: prins jf. Mol Cell. 2014 Mar 20;53(6):1020-30. doi: 10.1016/j.molcel.2014.02.027. Mol Cell. 2014. PMID: 24656133 Free PMC article.

10

Systematic evaluation of spliced alignment programs for RNA-seq data.

Engström PG, Steijger T, Sipos B, Grant GR, Kahles A, Rätsch G, Goldman N, Hubbard TJ, Harrow J, Guigó R, Bertone P; RGASP Consortium. Engström PG, et al. Nat Methods. 2013 Dec;10(12):1185-91. doi: 10.1038/nmeth.2722. Epub 2013 Nov 3. Nat Methods. 2013. PMID: 24185836 Free PMC article.

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