McDermott JE - Search Results

1

Prediction of multi-drug resistance transporters using a novel sequence analysis method.

McDermott JE, Bruillard P, Overall CC, Gosink L, Lindemann SR. McDermott JE, et al. F1000Res. 2015 Mar 9;4:60. doi: 10.12688/f1000research.6200.2. eCollection 2015. F1000Res. 2015. PMID: 26913187 Free PMC article.

2

Global analysis of Salmonella alternative sigma factor E on protein translation.

Li J, Nakayasu ES, Overall CC, Johnson RC, Kidwai AS, McDermott JE, Ansong C, Heffron F, Cambronne ED, Adkins JN. Li J, et al. Among authors: mcdermott je. J Proteome Res. 2015 Apr 3;14(4):1716-26. doi: 10.1021/pr5010423. Epub 2015 Feb 27. J Proteome Res. 2015. PMID: 25686268 Free PMC article.

3

Analysis of the Salmonella regulatory network suggests involvement of SsrB and H-NS in σ(E)-regulated SPI-2 gene expression.

Li J, Overall CC, Nakayasu ES, Kidwai AS, Jones MB, Johnson RC, Nguyen NT, McDermott JE, Ansong C, Heffron F, Cambronne ED, Adkins JN. Li J, et al. Among authors: mcdermott je. Front Microbiol. 2015 Feb 10;6:27. doi: 10.3389/fmicb.2015.00027. eCollection 2015. Front Microbiol. 2015. PMID: 25713562 Free PMC article.

4

ChIP-Seq Analysis of the σE Regulon of Salmonella enterica Serovar Typhimurium Reveals New Genes Implicated in Heat Shock and Oxidative Stress Response.

Li J, Overall CC, Johnson RC, Jones MB, McDermott JE, Heffron F, Adkins JN, Cambronne ED. Li J, et al. Among authors: mcdermott je. PLoS One. 2015 Sep 21;10(9):e0138466. doi: 10.1371/journal.pone.0138466. eCollection 2015. PLoS One. 2015. PMID: 26389830 Free PMC article.

5

Network analysis of transcriptomics expands regulatory landscapes in Synechococcus sp. PCC 7002.

McClure RS, Overall CC, McDermott JE, Hill EA, Markillie LM, McCue LA, Taylor RC, Ludwig M, Bryant DA, Beliaev AS. McClure RS, et al. Among authors: mcdermott je. Nucleic Acids Res. 2016 Oct 14;44(18):8810-8825. doi: 10.1093/nar/gkw737. Epub 2016 Aug 27. Nucleic Acids Res. 2016. PMID: 27568004 Free PMC article.

6

Species-specific transcriptomic network inference of interspecies interactions.

McClure RS, Overall CC, Hill EA, Song HS, Charania M, Bernstein HC, McDermott JE, Beliaev AS. McClure RS, et al. Among authors: mcdermott je. ISME J. 2018 Aug;12(8):2011-2023. doi: 10.1038/s41396-018-0145-6. Epub 2018 May 24. ISME J. 2018. PMID: 29795448 Free PMC article.

7

Improving network inference algorithms using resampling methods.

Colby SM, McClure RS, Overall CC, Renslow RS, McDermott JE. Colby SM, et al. Among authors: mcdermott je. BMC Bioinformatics. 2018 Oct 12;19(1):376. doi: 10.1186/s12859-018-2402-0. BMC Bioinformatics. 2018. PMID: 30314469 Free PMC article.

8

Prediction of bacterial E3 ubiquitin ligase effectors using reduced amino acid peptide fingerprinting.

McDermott JE, Cort JR, Nakayasu ES, Pruneda JN, Overall C, Adkins JN. McDermott JE, et al. PeerJ. 2019 Jun 7;7:e7055. doi: 10.7717/peerj.7055. eCollection 2019. PeerJ. 2019. PMID: 31211016 Free PMC article.

9

An Integrative Analysis of Tumor Proteomic and Phosphoproteomic Profiles to Examine the Relationships Between Kinase Activity and Phosphorylation.

Arshad OA, Danna V, Petyuk VA, Piehowski PD, Liu T, Rodland KD, McDermott JE. Arshad OA, et al. Among authors: mcdermott je. Mol Cell Proteomics. 2019 Aug 9;18(8 suppl 1):S26-S36. doi: 10.1074/mcp.RA119.001540. Epub 2019 Jun 21. Mol Cell Proteomics. 2019. PMID: 31227600 Free PMC article.

10

Unified feature association networks through integration of transcriptomic and proteomic data.

McClure RS, Wendler JP, Adkins JN, Swanstrom J, Baric R, Kaiser BLD, Oxford KL, Waters KM, McDermott JE. McClure RS, et al. Among authors: mcdermott je. PLoS Comput Biol. 2019 Sep 17;15(9):e1007241. doi: 10.1371/journal.pcbi.1007241. eCollection 2019 Sep. PLoS Comput Biol. 2019. PMID: 31527878 Free PMC article.

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