Thiele I - Search Results

1

Phenotypic differentiation of gastrointestinal microbes is reflected in their encoded metabolic repertoires.

Bauer E, Laczny CC, Magnusdottir S, Wilmes P, Thiele I. Bauer E, et al. Among authors: thiele i. Microbiome. 2015 Nov 30;3:55. doi: 10.1186/s40168-015-0121-6. Microbiome. 2015. PMID: 26617277 Free PMC article.

2

Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes.

Magnúsdóttir S, Ravcheev D, de Crécy-Lagard V, Thiele I. Magnúsdóttir S, et al. Among authors: thiele i. Front Genet. 2015 Apr 20;6:148. doi: 10.3389/fgene.2015.00148. eCollection 2015. Front Genet. 2015. PMID: 25941533 Free PMC article.

3

Do genome-scale models need exact solvers or clearer standards?

Ebrahim A, Almaas E, Bauer E, Bordbar A, Burgard AP, Chang RL, Dräger A, Famili I, Feist AM, Fleming RM, Fong SS, Hatzimanikatis V, Herrgård MJ, Holder A, Hucka M, Hyduke D, Jamshidi N, Lee SY, Le Novère N, Lerman JA, Lewis NE, Ma D, Mahadevan R, Maranas C, Nagarajan H, Navid A, Nielsen J, Nielsen LK, Nogales J, Noronha A, Pal C, Palsson BO, Papin JA, Patil KR, Price ND, Reed JL, Saunders M, Senger RS, Sonnenschein N, Sun Y, Thiele I. Ebrahim A, et al. Among authors: thiele i. Mol Syst Biol. 2015 Oct 14;11(10):831. doi: 10.15252/msb.20156157. Mol Syst Biol. 2015. PMID: 26467284 Free PMC article. No abstract available.

4

Erratum to: Phenotypic differentiation of gastrointestinal microbes is reflected in their encoded metabolic repertoires.

Bauer E, Laczny CC, Magnusdottir S, Wilmes P, Thiele I. Bauer E, et al. Among authors: thiele i. Microbiome. 2016 Jul 4;4(1):35. doi: 10.1186/s40168-016-0180-3. Microbiome. 2016. PMID: 27377779 Free PMC article. No abstract available.

5

Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota.

Magnúsdóttir S, Heinken A, Kutt L, Ravcheev DA, Bauer E, Noronha A, Greenhalgh K, Jäger C, Baginska J, Wilmes P, Fleming RM, Thiele I. Magnúsdóttir S, et al. Among authors: thiele i. Nat Biotechnol. 2017 Jan;35(1):81-89. doi: 10.1038/nbt.3703. Epub 2016 Nov 28. Nat Biotechnol. 2017. PMID: 27893703

6

BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities.

Bauer E, Zimmermann J, Baldini F, Thiele I, Kaleta C. Bauer E, et al. Among authors: thiele i. PLoS Comput Biol. 2017 May 22;13(5):e1005544. doi: 10.1371/journal.pcbi.1005544. eCollection 2017 May. PLoS Comput Biol. 2017. PMID: 28531184 Free PMC article.

7

Modeling metabolism of the human gut microbiome.

Magnúsdóttir S, Thiele I. Magnúsdóttir S, et al. Among authors: thiele i. Curr Opin Biotechnol. 2018 Jun;51:90-96. doi: 10.1016/j.copbio.2017.12.005. Epub 2017 Dec 16. Curr Opin Biotechnol. 2018. PMID: 29258014 Free article. Review.

8

From Network Analysis to Functional Metabolic Modeling of the Human Gut Microbiota.

Bauer E, Thiele I. Bauer E, et al. Among authors: thiele i. mSystems. 2018 Mar 27;3(3):e00209-17. doi: 10.1128/mSystems.00209-17. eCollection 2018 May-Jun. mSystems. 2018. PMID: 29600286 Free PMC article. Review.

9

Reply to "Challenges in modeling the human gut microbiome".

Magnúsdóttir S, Heinken A, Fleming RMT, Thiele I. Magnúsdóttir S, et al. Among authors: thiele i. Nat Biotechnol. 2018 Aug 6;36(8):686-691. doi: 10.1038/nbt.4212. Nat Biotechnol. 2018. PMID: 30080835 No abstract available.

10

From metagenomic data to personalized in silico microbiotas: predicting dietary supplements for Crohn's disease.

Bauer E, Thiele I. Bauer E, et al. Among authors: thiele i. NPJ Syst Biol Appl. 2018 Aug 1;4:27. doi: 10.1038/s41540-018-0063-2. eCollection 2018. NPJ Syst Biol Appl. 2018. PMID: 30083388 Free PMC article.

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