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Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax).
Lamichhaney S, Fan G, Widemo F, Gunnarsson U, Thalmann DS, Hoeppner MP, Kerje S, Gustafson U, Shi C, Zhang H, Chen W, Liang X, Huang L, Wang J, Liang E, Wu Q, Lee SM, Xu X, Höglund J, Liu X, Andersson L. Lamichhaney S, et al. Among authors: liu x. Nat Genet. 2016 Jan;48(1):84-8. doi: 10.1038/ng.3430. Epub 2015 Nov 16. Nat Genet. 2016. PMID: 26569123
The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line.
Xu X, Nagarajan H, Lewis NE, Pan S, Cai Z, Liu X, Chen W, Xie M, Wang W, Hammond S, Andersen MR, Neff N, Passarelli B, Koh W, Fan HC, Wang J, Gui Y, Lee KH, Betenbaugh MJ, Quake SR, Famili I, Palsson BO, Wang J. Xu X, et al. Among authors: liu x. Nat Biotechnol. 2011 Jul 31;29(8):735-41. doi: 10.1038/nbt.1932. Nat Biotechnol. 2011. PMID: 21804562 Free PMC article.
Analysis of elite variety tag SNPs reveals an important allele in upland rice.
Lyu J, Zhang S, Dong Y, He W, Zhang J, Deng X, Zhang Y, Li X, Li B, Huang W, Wan W, Yu Y, Li Q, Li J, Liu X, Wang B, Tao D, Zhang G, Wang J, Xu X, Hu F, Wang W. Lyu J, et al. Among authors: liu x. Nat Commun. 2013;4:2138. doi: 10.1038/ncomms3138. Nat Commun. 2013. PMID: 23828614 Free PMC article.
Baiji genomes reveal low genetic variability and new insights into secondary aquatic adaptations.
Zhou X, Sun F, Xu S, Fan G, Zhu K, Liu X, Chen Y, Shi C, Yang Y, Huang Z, Chen J, Hou H, Guo X, Chen W, Chen Y, Wang X, Lv T, Yang D, Zhou J, Huang B, Wang Z, Zhao W, Tian R, Xiong Z, Xu J, Liang X, Chen B, Liu W, Wang J, Pan S, Fang X, Li M, Wei F, Xu X, Zhou K, Wang J, Yang G. Zhou X, et al. Among authors: liu x, liu w. Nat Commun. 2013;4:2708. doi: 10.1038/ncomms3708. Nat Commun. 2013. PMID: 24169659 Free PMC article.
Design and characterization of a 52K SNP chip for goats.
Tosser-Klopp G, Bardou P, Bouchez O, Cabau C, Crooijmans R, Dong Y, Donnadieu-Tonon C, Eggen A, Heuven HC, Jamli S, Jiken AJ, Klopp C, Lawley CT, McEwan J, Martin P, Moreno CR, Mulsant P, Nabihoudine I, Pailhoux E, Palhière I, Rupp R, Sarry J, Sayre BL, Tircazes A, Jun Wang, Wang W, Zhang W; International Goat Genome Consortium. Tosser-Klopp G, et al. PLoS One. 2014 Jan 22;9(1):e86227. doi: 10.1371/journal.pone.0086227. eCollection 2014. PLoS One. 2014. PMID: 24465974 Free PMC article.
The sheep genome illuminates biology of the rumen and lipid metabolism.
Jiang Y, Xie M, Chen W, Talbot R, Maddox JF, Faraut T, Wu C, Muzny DM, Li Y, Zhang W, Stanton JA, Brauning R, Barris WC, Hourlier T, Aken BL, Searle SMJ, Adelson DL, Bian C, Cam GR, Chen Y, Cheng S, DeSilva U, Dixen K, Dong Y, Fan G, Franklin IR, Fu S, Guan R, Highland MA, Holder ME, Huang G, Ingham AB, Jhangiani SN, Kalra D, Kovar CL, Lee SL, Liu W, Liu X, Lu C, Lv T, Mathew T, McWilliam S, Menzies M, Pan S, Robelin D, Servin B, Townley D, Wang W, Wei B, White SN, Yang X, Ye C, Yue Y, Zeng P, Zhou Q, Hansen JB, Kristensen K, Gibbs RA, Flicek P, Warkup CC, Jones HE, Oddy VH, Nicholas FW, McEwan JC, Kijas J, Wang J, Worley KC, Archibald AL, Cockett N, Xu X, Wang W, Dalrymple BP. Jiang Y, et al. Among authors: liu x, liu w. Science. 2014 Jun 6;344(6188):1168-1173. doi: 10.1126/science.1252806. Science. 2014. PMID: 24904168 Free PMC article.
Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
Qi X, Li MW, Xie M, Liu X, Ni M, Shao G, Song C, Kay-Yuen Yim A, Tao Y, Wong FL, Isobe S, Wong CF, Wong KS, Xu C, Li C, Wang Y, Guan R, Sun F, Fan G, Xiao Z, Zhou F, Phang TH, Liu X, Tong SW, Chan TF, Yiu SM, Tabata S, Wang J, Xu X, Lam HM. Qi X, et al. Among authors: liu x. Nat Commun. 2014 Jul 9;5:4340. doi: 10.1038/ncomms5340. Nat Commun. 2014. PMID: 25004933 Free PMC article.
The genome sequence of the orchid Phalaenopsis equestris.
Cai J, Liu X, Vanneste K, Proost S, Tsai WC, Liu KW, Chen LJ, He Y, Xu Q, Bian C, Zheng Z, Sun F, Liu W, Hsiao YY, Pan ZJ, Hsu CC, Yang YP, Hsu YC, Chuang YC, Dievart A, Dufayard JF, Xu X, Wang JY, Wang J, Xiao XJ, Zhao XM, Du R, Zhang GQ, Wang M, Su YY, Xie GC, Liu GH, Li LQ, Huang LQ, Luo YB, Chen HH, Van de Peer Y, Liu ZJ. Cai J, et al. Among authors: liu zj, liu gh, liu x, liu kw, liu w. Nat Genet. 2015 Jan;47(1):65-72. doi: 10.1038/ng.3149. Epub 2014 Nov 24. Nat Genet. 2015. PMID: 25420146
Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes.
You X, Bian C, Zan Q, Xu X, Liu X, Chen J, Wang J, Qiu Y, Li W, Zhang X, Sun Y, Chen S, Hong W, Li Y, Cheng S, Fan G, Shi C, Liang J, Tom Tang Y, Yang C, Ruan Z, Bai J, Peng C, Mu Q, Lu J, Fan M, Yang S, Huang Z, Jiang X, Fang X, Zhang G, Zhang Y, Polgar G, Yu H, Li J, Liu Z, Zhang G, Ravi V, Coon SL, Wang J, Yang H, Venkatesh B, Wang J, Shi Q. You X, et al. Among authors: liu z, liu x. Nat Commun. 2014 Dec 2;5:5594. doi: 10.1038/ncomms6594. Nat Commun. 2014. PMID: 25463417 Free PMC article.
Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution.
Li F, Fan G, Lu C, Xiao G, Zou C, Kohel RJ, Ma Z, Shang H, Ma X, Wu J, Liang X, Huang G, Percy RG, Liu K, Yang W, Chen W, Du X, Shi C, Yuan Y, Ye W, Liu X, Zhang X, Liu W, Wei H, Wei S, Huang G, Zhang X, Zhu S, Zhang H, Sun F, Wang X, Liang J, Wang J, He Q, Huang L, Wang J, Cui J, Song G, Wang K, Xu X, Yu JZ, Zhu Y, Yu S. Li F, et al. Among authors: liu k, liu x, liu w. Nat Biotechnol. 2015 May;33(5):524-30. doi: 10.1038/nbt.3208. Epub 2015 Apr 20. Nat Biotechnol. 2015. PMID: 25893780
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