Wilm A - Search Results

1

Direct whole-genome deep-sequencing of human respiratory syncytial virus A and B from Vietnamese children identifies distinct patterns of inter- and intra-host evolution.

Do LAH, Wilm A, van Doorn HR, Lam HM, Sim S, Sukumaran R, Tran AT, Nguyen BH, Tran TTL, Tran QH, Vo QB, Dac NAT, Trinh HN, Nguyen TTH, Binh BTL, Le K, Nguyen MT, Thai QT, Vo TV, Ngo NQM, Dang TKH, Cao NH, Tran TV, Ho LV, Farrar J, de Jong M, Chen S, Nagarajan N, Bryant JE, Hibberd ML. Do LAH, et al. Among authors: wilm a. J Gen Virol. 2015 Dec;96(12):3470-3483. doi: 10.1099/jgv.0.000298. J Gen Virol. 2015. PMID: 26407694 Free PMC article.

2

Tracking Dengue Virus Intra-host Genetic Diversity during Human-to-Mosquito Transmission.

Sim S, Aw PP, Wilm A, Teoh G, Hue KD, Nguyen NM, Nagarajan N, Simmons CP, Hibberd ML. Sim S, et al. Among authors: wilm a. PLoS Negl Trop Dis. 2015 Sep 1;9(9):e0004052. doi: 10.1371/journal.pntd.0004052. eCollection 2015. PLoS Negl Trop Dis. 2015. PMID: 26325059 Free PMC article.

3

Next-generation whole genome sequencing of dengue virus.

Aw PP, de Sessions PF, Wilm A, Hoang LT, Nagarajan N, Sessions OM, Hibberd ML. Aw PP, et al. Among authors: wilm a. Methods Mol Biol. 2014;1138:175-95. doi: 10.1007/978-1-4939-0348-1_12. Methods Mol Biol. 2014. PMID: 24696338

4

LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets.

Wilm A, Aw PP, Bertrand D, Yeo GH, Ong SH, Wong CH, Khor CC, Petric R, Hibberd ML, Nagarajan N. Wilm A, et al. Nucleic Acids Res. 2012 Dec;40(22):11189-201. doi: 10.1093/nar/gks918. Epub 2012 Oct 12. Nucleic Acids Res. 2012. PMID: 23066108 Free PMC article.

5

Species identification and profiling of complex microbial communities using shotgun Illumina sequencing of 16S rRNA amplicon sequences.

Ong SH, Kukkillaya VU, Wilm A, Lay C, Ho EX, Low L, Hibberd ML, Nagarajan N. Ong SH, et al. Among authors: wilm a. PLoS One. 2013 Apr 8;8(4):e60811. doi: 10.1371/journal.pone.0060811. Print 2013. PLoS One. 2013. PMID: 23579286 Free PMC article.

6

Single-virion sequencing of lamivudine-treated HBV populations reveal population evolution dynamics and demographic history.

Zhu YO, Aw PPK, de Sessions PF, Hong S, See LX, Hong LZ, Wilm A, Li CH, Hue S, Lim SG, Nagarajan N, Burkholder WF, Hibberd M. Zhu YO, et al. Among authors: wilm a. BMC Genomics. 2017 Oct 27;18(1):829. doi: 10.1186/s12864-017-4217-1. BMC Genomics. 2017. PMID: 29078745 Free PMC article.

7

A randomized, double-blind placebo controlled trial of balapiravir, a polymerase inhibitor, in adult dengue patients.

Nguyen NM, Tran CN, Phung LK, Duong KT, Huynh Hle A, Farrar J, Nguyen QT, Tran HT, Nguyen CV, Merson L, Hoang LT, Hibberd ML, Aw PP, Wilm A, Nagarajan N, Nguyen DT, Pham MP, Nguyen TT, Javanbakht H, Klumpp K, Hammond J, Petric R, Wolbers M, Nguyen CT, Simmons CP. Nguyen NM, et al. Among authors: wilm a. J Infect Dis. 2013 May 1;207(9):1442-50. doi: 10.1093/infdis/jis470. Epub 2012 Jul 17. J Infect Dis. 2013. PMID: 22807519 Free PMC article. Clinical Trial.

8

Analysis of Dengue Virus Genetic Diversity during Human and Mosquito Infection Reveals Genetic Constraints.

Sessions OM, Wilm A, Kamaraj US, Choy MM, Chow A, Chong Y, Ong XM, Nagarajan N, Cook AR, Ooi EE. Sessions OM, et al. Among authors: wilm a. PLoS Negl Trop Dis. 2015 Sep 1;9(9):e0004044. doi: 10.1371/journal.pntd.0004044. eCollection 2015. PLoS Negl Trop Dis. 2015. PMID: 26327586 Free PMC article.

9

Fast and sensitive mapping of nanopore sequencing reads with GraphMap.

Sović I, Šikić M, Wilm A, Fenlon SN, Chen S, Nagarajan N. Sović I, et al. Among authors: wilm a. Nat Commun. 2016 Apr 15;7:11307. doi: 10.1038/ncomms11307. Nat Commun. 2016. PMID: 27079541 Free PMC article.

10

Genomic characterization of three unique Dehalococcoides that respire on persistent polychlorinated biphenyls.

Wang S, Chng KR, Wilm A, Zhao S, Yang KL, Nagarajan N, He J. Wang S, et al. Among authors: wilm a. Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):12103-8. doi: 10.1073/pnas.1404845111. Epub 2014 Jul 15. Proc Natl Acad Sci U S A. 2014. PMID: 25028492 Free PMC article.

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