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An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography.
Yamashita K, Pan D, Okuda T, Sugahara M, Kodan A, Yamaguchi T, Murai T, Gomi K, Kajiyama N, Mizohata E, Suzuki M, Nango E, Tono K, Joti Y, Kameshima T, Park J, Song C, Hatsui T, Yabashi M, Iwata S, Kato H, Ago H, Yamamoto M, Nakatsu T. Yamashita K, et al. Sci Rep. 2015 Sep 11;5:14017. doi: 10.1038/srep14017. Sci Rep. 2015. PMID: 26360462 Free PMC article.
X-ray Crystallographic Structure of Thermophilic Rhodopsin: IMPLICATIONS FOR HIGH THERMAL STABILITY AND OPTOGENETIC FUNCTION.
Tsukamoto T, Mizutani K, Hasegawa T, Takahashi M, Honda N, Hashimoto N, Shimono K, Yamashita K, Yamamoto M, Miyauchi S, Takagi S, Hayashi S, Murata T, Sudo Y. Tsukamoto T, et al. Among authors: yamashita k. J Biol Chem. 2016 Jun 3;291(23):12223-32. doi: 10.1074/jbc.M116.719815. Epub 2016 Apr 18. J Biol Chem. 2016. PMID: 27129243 Free PMC article.
Crystal structures of the TRIC trimeric intracellular cation channel orthologues.
Kasuya G, Hiraizumi M, Maturana AD, Kumazaki K, Fujiwara Y, Liu K, Nakada-Nakura Y, Iwata S, Tsukada K, Komori T, Uemura S, Goto Y, Nakane T, Takemoto M, Kato HE, Yamashita K, Wada M, Ito K, Ishitani R, Hattori M, Nureki O. Kasuya G, et al. Among authors: yamashita k. Cell Res. 2016 Dec;26(12):1288-1301. doi: 10.1038/cr.2016.140. Cell Res. 2016. PMID: 27909292 Free PMC article.
Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Suga M, Akita F, Sugahara M, Kubo M, Nakajima Y, Nakane T, Yamashita K, Umena Y, Nakabayashi M, Yamane T, Nakano T, Suzuki M, Masuda T, Inoue S, Kimura T, Nomura T, Yonekura S, Yu LJ, Sakamoto T, Motomura T, Chen JH, Kato Y, Noguchi T, Tono K, Joti Y, Kameshima T, Hatsui T, Nango E, Tanaka R, Naitow H, Matsuura Y, Yamashita A, Yamamoto M, Nureki O, Yabashi M, Ishikawa T, Iwata S, Shen JR. Suga M, et al. Among authors: yamashita a, yamashita k. Nature. 2017 Mar 2;543(7643):131-135. doi: 10.1038/nature21400. Epub 2017 Feb 20. Nature. 2017. PMID: 28219079 Free article.
A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Shimada A, Kubo M, Baba S, Yamashita K, Hirata K, Ueno G, Nomura T, Kimura T, Shinzawa-Itoh K, Baba J, Hatano K, Eto Y, Miyamoto A, Murakami H, Kumasaka T, Owada S, Tono K, Yabashi M, Yamaguchi Y, Yanagisawa S, Sakaguchi M, Ogura T, Komiya R, Yan J, Yamashita E, Yamamoto M, Ago H, Yoshikawa S, Tsukihara T. Shimada A, et al. Among authors: yamashita k, yamashita e. Sci Adv. 2017 Jul 14;3(7):e1603042. doi: 10.1126/sciadv.1603042. eCollection 2017 Jul. Sci Adv. 2017. PMID: 28740863 Free PMC article.
Protein microcrystallography using synchrotron radiation.
Yamamoto M, Hirata K, Yamashita K, Hasegawa K, Ueno G, Ago H, Kumasaka T. Yamamoto M, et al. Among authors: yamashita k. IUCrJ. 2017 Aug 8;4(Pt 5):529-539. doi: 10.1107/S2052252517008193. eCollection 2017 Sep 1. IUCrJ. 2017. PMID: 28989710 Free PMC article. Review.
Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography.
Yamashita K, Kuwabara N, Nakane T, Murai T, Mizohata E, Sugahara M, Pan D, Masuda T, Suzuki M, Sato T, Kodan A, Yamaguchi T, Nango E, Tanaka T, Tono K, Joti Y, Kameshima T, Hatsui T, Yabashi M, Manya H, Endo T, Kato R, Senda T, Kato H, Iwata S, Ago H, Yamamoto M, Yumoto F, Nakatsu T. Yamashita K, et al. IUCrJ. 2017 Aug 8;4(Pt 5):639-647. doi: 10.1107/S2052252517008557. eCollection 2017 Sep 1. IUCrJ. 2017. PMID: 28989719 Free PMC article.
5,484 results