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ACE: accurate correction of errors using K-mer tries.
Sheikhizadeh S, de Ridder D. Sheikhizadeh S, et al. Among authors: de ridder d. Bioinformatics. 2015 Oct 1;31(19):3216-8. doi: 10.1093/bioinformatics/btv332. Epub 2015 May 28. Bioinformatics. 2015. PMID: 26026137
Metabolite and reaction inference based on enzyme specificities.
de Groot MJ, van Berlo RJ, van Winden WA, Verheijen PJ, Reinders MJ, de Ridder D. de Groot MJ, et al. Among authors: de ridder d. Bioinformatics. 2009 Nov 15;25(22):2975-82. doi: 10.1093/bioinformatics/btp507. Epub 2009 Aug 20. Bioinformatics. 2009. PMID: 19696044 Free PMC article.
Integrating genome assemblies with MAIA.
Nijkamp J, Winterbach W, van den Broek M, Daran JM, Reinders M, de Ridder D. Nijkamp J, et al. Among authors: de ridder d. Bioinformatics. 2010 Sep 15;26(18):i433-9. doi: 10.1093/bioinformatics/btq366. Bioinformatics. 2010. PMID: 20823304 Free PMC article.
De novo detection of copy number variation by co-assembly.
Nijkamp JF, van den Broek MA, Geertman JM, Reinders MJ, Daran JM, de Ridder D. Nijkamp JF, et al. Among authors: de ridder d. Bioinformatics. 2012 Dec 15;28(24):3195-202. doi: 10.1093/bioinformatics/bts601. Epub 2012 Oct 9. Bioinformatics. 2012. PMID: 23047563
Pattern recognition in bioinformatics.
de Ridder D, de Ridder J, Reinders MJ. de Ridder D, et al. Among authors: de ridder j. Brief Bioinform. 2013 Sep;14(5):633-47. doi: 10.1093/bib/bbt020. Epub 2013 Apr 4. Brief Bioinform. 2013. PMID: 23559637 Review.
931 results