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Gateways to the FANTOM5 promoter level mammalian expression atlas.
Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F, Ishikawa-Kato S, Mungall CJ, Arner E, Baillie JK, Bertin N, Bono H, de Hoon M, Diehl AD, Dimont E, Freeman TC, Fujieda K, Hide W, Kaliyaperumal R, Katayama T, Lassmann T, Meehan TF, Nishikata K, Ono H, Rehli M, Sandelin A, Schultes EA, 't Hoen PA, Tatum Z, Thompson M, Toyoda T, Wright DW, Daub CO, Itoh M, Carninci P, Hayashizaki Y, Forrest AR, Kawaji H; FANTOM consortium. Lizio M, et al. Among authors: katayama t, t hoen pa. Genome Biol. 2015 Jan 5;16(1):22. doi: 10.1186/s13059-014-0560-6. Genome Biol. 2015. PMID: 25723102 Free PMC article.
Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.
Grapotte M, Saraswat M, Bessière C, Menichelli C, Ramilowski JA, Severin J, Hayashizaki Y, Itoh M, Tagami M, Murata M, Kojima-Ishiyama M, Noma S, Noguchi S, Kasukawa T, Hasegawa A, Suzuki H, Nishiyori-Sueki H, Frith MC; FANTOM consortium; Chatelain C, Carninci P, de Hoon MJL, Wasserman WW, Bréhélin L, Lecellier CH. Grapotte M, et al. Nat Commun. 2021 Jun 2;12(1):3297. doi: 10.1038/s41467-021-23143-7. Nat Commun. 2021. PMID: 34078885 Free PMC article.
Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.
Grapotte M, Saraswat M, Bessière C, Menichelli C, Ramilowski JA, Severin J, Hayashizaki Y, Itoh M, Tagami M, Murata M, Kojima-Ishiyama M, Noma S, Noguchi S, Kasukawa T, Hasegawa A, Suzuki H, Nishiyori-Sueki H, Frith MC; FANTOM consortium; Chatelain C, Carninci P, de Hoon MJL, Wasserman WW, Bréhélin L, Lecellier CH. Grapotte M, et al. Nat Commun. 2022 Mar 1;13(1):1200. doi: 10.1038/s41467-022-28758-y. Nat Commun. 2022. PMID: 35232988 Free PMC article. No abstract available.
Atrimonas thermophila gen. nov., sp. nov., a novel anaerobic thermophilic bacterium of the phylum Atribacterota isolated from deep subsurface gas field and proposal of Atrimonadaceae fam. nov. within the class Atribacteria in the phylum Atribacterota.
Kawamoto H, Watanabe M, Mochimaru H, Nakahara N, Meng XY, Sakamoto S, Morinaga K, Katayama T, Yoshioka H, Nomura N, Tamaki H. Kawamoto H, et al. Among authors: katayama t. Syst Appl Microbiol. 2024 May 6;47(4):126515. doi: 10.1016/j.syapm.2024.126515. Online ahead of print. Syst Appl Microbiol. 2024. PMID: 38776610 Free article.
A two-dose viral-vectored Plasmodium vivax multistage vaccine confers durable protection and transmission-blockade in a pre-clinical study.
Yamamoto Y, Fabbri C, Okuhara D, Takagi R, Kawabata Y, Katayama T, Iyori M, Hasyim AA, Sakamoto A, Mizukami H, Shida H, Lopes S, Yoshida S. Yamamoto Y, et al. Among authors: katayama t. Front Immunol. 2024 Apr 30;15:1372584. doi: 10.3389/fimmu.2024.1372584. eCollection 2024. Front Immunol. 2024. PMID: 38745665 Free PMC article.
Human gut-associated Bifidobacterium species salvage exogenous indole, a uremic toxin precursor, to synthesize indole-3-lactic acid via tryptophan.
Yong CC, Sakurai T, Kaneko H, Horigome A, Mitsuyama E, Nakajima A, Katoh T, Sakanaka M, Abe T, Xiao JZ, Tanaka M, Odamaki T, Katayama T. Yong CC, et al. Among authors: katayama t. Gut Microbes. 2024 Jan-Dec;16(1):2347728. doi: 10.1080/19490976.2024.2347728. Epub 2024 May 5. Gut Microbes. 2024. PMID: 38706226 Free PMC article.
1,756 results