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Rfam 12.0: updates to the RNA families database.
Nawrocki EP, Burge SW, Bateman A, Daub J, Eberhardt RY, Eddy SR, Floden EW, Gardner PP, Jones TA, Tate J, Finn RD. Nawrocki EP, et al. Among authors: jones ta. Nucleic Acids Res. 2015 Jan;43(Database issue):D130-7. doi: 10.1093/nar/gku1063. Epub 2014 Nov 11. Nucleic Acids Res. 2015. PMID: 25392425 Free PMC article.
Dfam: a database of repetitive DNA based on profile hidden Markov models.
Wheeler TJ, Clements J, Eddy SR, Hubley R, Jones TA, Jurka J, Smit AF, Finn RD. Wheeler TJ, et al. Among authors: jones ta. Nucleic Acids Res. 2013 Jan;41(Database issue):D70-82. doi: 10.1093/nar/gks1265. Epub 2012 Nov 30. Nucleic Acids Res. 2013. PMID: 23203985 Free PMC article.
The Dfam database of repetitive DNA families.
Hubley R, Finn RD, Clements J, Eddy SR, Jones TA, Bao W, Smit AF, Wheeler TJ. Hubley R, et al. Among authors: jones ta. Nucleic Acids Res. 2016 Jan 4;44(D1):D81-9. doi: 10.1093/nar/gkv1272. Epub 2015 Nov 26. Nucleic Acids Res. 2016. PMID: 26612867 Free PMC article.
A survey of nematode SmY RNAs.
Jones TA, Otto W, Marz M, Eddy SR, Stadler PF. Jones TA, et al. RNA Biol. 2009 Jan-Mar;6(1):5-8. doi: 10.4161/rna.6.1.7634. Epub 2009 Jan 26. RNA Biol. 2009. PMID: 19106623 Review.
Group I introns are widespread in archaea.
Nawrocki EP, Jones TA, Eddy SR. Nawrocki EP, et al. Among authors: jones ta. Nucleic Acids Res. 2018 Sep 6;46(15):7970-7976. doi: 10.1093/nar/gky414. Nucleic Acids Res. 2018. PMID: 29788499 Free PMC article.
Identification and Characterization of a Class of MALAT1-like Genomic Loci.
Zhang B, Mao YS, Diermeier SD, Novikova IV, Nawrocki EP, Jones TA, Lazar Z, Tung CS, Luo W, Eddy SR, Sanbonmatsu KY, Spector DL. Zhang B, et al. Among authors: jones ta. Cell Rep. 2017 May 23;19(8):1723-1738. doi: 10.1016/j.celrep.2017.05.006. Cell Rep. 2017. PMID: 28538188 Free PMC article.
Discovery of 17 conserved structural RNAs in fungi.
Gao W, Jones TA, Rivas E. Gao W, et al. Among authors: jones ta. Nucleic Acids Res. 2021 Jun 21;49(11):6128-6143. doi: 10.1093/nar/gkab355. Nucleic Acids Res. 2021. PMID: 34086938 Free PMC article.
Initial sequencing and comparative analysis of the mouse genome.
Mouse Genome Sequencing Consortium; Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, Barlow K, Beck S, Berry E, Birren B, Bloom T, Bork P, Botcherby M, Bray N, Brent MR, Brown DG, Brown SD, Bult C, Burton J, Butler J, Campbell RD, Carninci P, Cawley S, Chiaromonte F, Chinwalla AT, Church DM, Clamp M, Clee C, Collins FS, Cook LL, Copley RR, Coulson A, Couronne O, Cuff J, Curwen V, Cutts T, Daly M, David R, Davies J, Delehaunty KD, Deri J, Dermitzakis ET, Dewey C, Dickens NJ, Diekhans M, Dodge S, Dubchak I, Dunn DM, Eddy SR, Elnitski L, Emes RD, Eswara P, Eyras E, Felsenfeld A, Fewell GA, Flicek P, Foley K, Frankel WN, Fulton LA, Fulton RS, Furey TS, Gage D, Gibbs RA, Glusman G, Gnerre S, Goldman N, Goodstadt L, Grafham D, Graves TA, Green ED, Gregory S, Guigó R, Guyer M, Hardison RC, Haussler D, Hayashizaki Y, Hillier LW, Hinrichs A, Hlavina W, Holzer T, Hsu F, Hua A, Hubbard T, Hunt A, Jackson I, Jaffe DB, Johnson LS, Jones M, Jones TA, Joy A, Kamal M, Karlsson EK, Karolchik D, Kasprzyk A, Kawai J, Keibler E, Kells C, Kent WJ, Kirby A, Kolbe DL, Korf… See abstract for full author list ➔ Mouse Genome Sequencing Consortium, et al. Among authors: jones m, jones ta. Nature. 2002 Dec 5;420(6915):520-62. doi: 10.1038/nature01262. Nature. 2002. PMID: 12466850
487 results