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Automated structural comparisons clarify the phylogeny of the right-hand-shaped polymerases.
Mol Biol Evol. 2014 Oct;31(10):2741-52. doi: 10.1093/molbev/msu219. Epub 2014 Jul 24.
Mol Biol Evol. 2014.
PMID: 25063440
Evidence for a non-catalytic ion-binding site in multiple RNA-dependent RNA polymerases.
Mönttinen HA, Ravantti JJ, Poranen MM.
Mönttinen HA, et al.
PLoS One. 2012;7(7):e40581. doi: 10.1371/journal.pone.0040581. Epub 2012 Jul 11.
PLoS One. 2012.
PMID: 22792374
Free PMC article.
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Common Structural Core of Three-Dozen Residues Reveals Intersuperfamily Relationships.
Mönttinen HA, Ravantti JJ, Poranen MM.
Mönttinen HA, et al.
Mol Biol Evol. 2016 Jul;33(7):1697-710. doi: 10.1093/molbev/msw047. Epub 2016 Mar 1.
Mol Biol Evol. 2016.
PMID: 26931141
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Structural comparison strengthens the higher-order classification of proteases related to chymotrypsin.
Mönttinen HAM, Ravantti JJ, Poranen MM.
Mönttinen HAM, et al.
PLoS One. 2019 May 17;14(5):e0216659. doi: 10.1371/journal.pone.0216659. eCollection 2019.
PLoS One. 2019.
PMID: 31100077
Free PMC article.
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Structure Unveils Relationships between RNA Virus Polymerases.
Mönttinen HAM, Ravantti JJ, Poranen MM.
Mönttinen HAM, et al.
Viruses. 2021 Feb 17;13(2):313. doi: 10.3390/v13020313.
Viruses. 2021.
PMID: 33671332
Free PMC article.
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The genomes of nucleocytoplasmic large DNA viruses: viral evolution writ large.
Mönttinen HAM, Bicep C, Williams TA, Hirt RP.
Mönttinen HAM, et al.
Microb Genom. 2021 Sep;7(9):000649. doi: 10.1099/mgen.0.000649.
Microb Genom. 2021.
PMID: 34542398
Free PMC article.
Review.
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Generation of de novo miRNAs from template switching during DNA replication.
Mönttinen HAM, Frilander MJ, Löytynoja A.
Mönttinen HAM, et al.
Proc Natl Acad Sci U S A. 2023 Dec 5;120(49):e2310752120. doi: 10.1073/pnas.2310752120. Epub 2023 Nov 29.
Proc Natl Acad Sci U S A. 2023.
PMID: 38019864
Free PMC article.
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Template switching in DNA replication can create and maintain RNA hairpins.
Mönttinen HAM, Löytynoja A.
Mönttinen HAM, et al.
Proc Natl Acad Sci U S A. 2022 Jan 25;119(4):e2107005119. doi: 10.1073/pnas.2107005119.
Proc Natl Acad Sci U S A. 2022.
PMID: 35046021
Free PMC article.
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