Parra G - Search Results

1

Patterns of coding variation in the complete exomes of three Neandertals.

Castellano S, Parra G, Sánchez-Quinto FA, Racimo F, Kuhlwilm M, Kircher M, Sawyer S, Fu Q, Heinze A, Nickel B, Dabney J, Siebauer M, White L, Burbano HA, Renaud G, Stenzel U, Lalueza-Fox C, de la Rasilla M, Rosas A, Rudan P, Brajković D, Kucan Ž, Gušic I, Shunkov MV, Derevianko AP, Viola B, Meyer M, Kelso J, Andrés AM, Pääbo S. Castellano S, et al. Among authors: parra g. Proc Natl Acad Sci U S A. 2014 May 6;111(18):6666-71. doi: 10.1073/pnas.1405138111. Epub 2014 Apr 21. Proc Natl Acad Sci U S A. 2014. PMID: 24753607 Free PMC article.

2

Long-Term Balancing Selection in LAD1 Maintains a Missense Trans-Species Polymorphism in Humans, Chimpanzees, and Bonobos.

Teixeira JC, de Filippo C, Weihmann A, Meneu JR, Racimo F, Dannemann M, Nickel B, Fischer A, Halbwax M, Andre C, Atencia R, Meyer M, Parra G, Pääbo S, Andrés AM. Teixeira JC, et al. Among authors: parra g. Mol Biol Evol. 2015 May;32(5):1186-96. doi: 10.1093/molbev/msv007. Epub 2015 Jan 19. Mol Biol Evol. 2015. PMID: 25605789

3

Genetic adaptation to levels of dietary selenium in recent human history.

White L, Romagné F, Müller E, Erlebach E, Weihmann A, Parra G, Andrés AM, Castellano S. White L, et al. Among authors: parra g. Mol Biol Evol. 2015 Jun;32(6):1507-18. doi: 10.1093/molbev/msv043. Epub 2015 Mar 3. Mol Biol Evol. 2015. PMID: 25739735

4

SelenoDB 2.0: annotation of selenoprotein genes in animals and their genetic diversity in humans.

Romagné F, Santesmasses D, White L, Sarangi GK, Mariotti M, Hübler R, Weihmann A, Parra G, Gladyshev VN, Guigó R, Castellano S. Romagné F, et al. Among authors: parra g. Nucleic Acids Res. 2014 Jan;42(Database issue):D437-43. doi: 10.1093/nar/gkt1045. Epub 2013 Nov 4. Nucleic Acids Res. 2014. PMID: 24194593 Free PMC article.

5

Recent Selection Changes in Human Genes under Long-Term Balancing Selection.

de Filippo C, Key FM, Ghirotto S, Benazzo A, Meneu JR, Weihmann A; NISC Comparative Sequence Program; Parra G, Green ED, Andrés AM. de Filippo C, et al. Among authors: parra g. Mol Biol Evol. 2016 Jun;33(6):1435-47. doi: 10.1093/molbev/msw023. Epub 2016 Feb 1. Mol Biol Evol. 2016. PMID: 26831942 Free PMC article.

6

Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes.

Guigo R, Dermitzakis ET, Agarwal P, Ponting CP, Parra G, Reymond A, Abril JF, Keibler E, Lyle R, Ucla C, Antonarakis SE, Brent MR. Guigo R, et al. Among authors: parra g. Proc Natl Acad Sci U S A. 2003 Feb 4;100(3):1140-5. doi: 10.1073/pnas.0337561100. Epub 2003 Jan 27. Proc Natl Acad Sci U S A. 2003. PMID: 12552088 Free PMC article.

7

WISCOD: a statistical web-enabled tool for the identification of significant protein coding regions.

Vilardell M, Parra G, Civit S. Vilardell M, et al. Among authors: parra g. Biomed Res Int. 2014;2014:282343. doi: 10.1155/2014/282343. Epub 2014 Sep 15. Biomed Res Int. 2014. PMID: 25313355 Free PMC article.

8

Controlling for Phylogenetic Relatedness and Evolutionary Rates Improves the Discovery of Associations Between Species' Phenotypic and Genomic Differences.

Prudent X, Parra G, Schwede P, Roscito JG, Hiller M. Prudent X, et al. Among authors: parra g. Mol Biol Evol. 2016 Aug;33(8):2135-50. doi: 10.1093/molbev/msw098. Epub 2016 May 24. Mol Biol Evol. 2016. PMID: 27222536 Free PMC article.

9

Phenotype loss is associated with widespread divergence of the gene regulatory landscape in evolution.

Roscito JG, Sameith K, Parra G, Langer BE, Petzold A, Moebius C, Bickle M, Rodrigues MT, Hiller M. Roscito JG, et al. Among authors: parra g. Nat Commun. 2018 Nov 9;9(1):4737. doi: 10.1038/s41467-018-07122-z. Nat Commun. 2018. PMID: 30413698 Free PMC article.

10

Using geneid to identify genes.

Blanco E, Parra G, Guigó R. Blanco E, et al. Among authors: parra g. Curr Protoc Bioinformatics. 2007 Jun;Chapter 4:Unit 4.3. doi: 10.1002/0471250953.bi0403s18. Curr Protoc Bioinformatics. 2007. PMID: 18428791

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