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Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies.
Neale DB, Wegrzyn JL, Stevens KA, Zimin AV, Puiu D, Crepeau MW, Cardeno C, Koriabine M, Holtz-Morris AE, Liechty JD, Martínez-García PJ, Vasquez-Gross HA, Lin BY, Zieve JJ, Dougherty WM, Fuentes-Soriano S, Wu LS, Gilbert D, Marçais G, Roberts M, Holt C, Yandell M, Davis JM, Smith KE, Dean JF, Lorenz WW, Whetten RW, Sederoff R, Wheeler N, McGuire PE, Main D, Loopstra CA, Mockaitis K, deJong PJ, Yorke JA, Salzberg SL, Langley CH. Neale DB, et al. Among authors: wegrzyn jl. Genome Biol. 2014 Mar 4;15(3):R59. doi: 10.1186/gb-2014-15-3-r59. Genome Biol. 2014. PMID: 24647006 Free PMC article.
TreeGenes: A forest tree genome database.
Wegrzyn JL, Lee JM, Tearse BR, Neale DB. Wegrzyn JL, et al. Int J Plant Genomics. 2008;2008:412875. doi: 10.1155/2008/412875. Int J Plant Genomics. 2008. PMID: 18725987 Free PMC article.
Multilocus patterns of nucleotide diversity and divergence reveal positive selection at candidate genes related to cold hardiness in coastal Douglas Fir (Pseudotsuga menziesii var. menziesii).
Eckert AJ, Wegrzyn JL, Pande B, Jermstad KD, Lee JM, Liechty JD, Tearse BR, Krutovsky KV, Neale DB. Eckert AJ, et al. Among authors: wegrzyn jl. Genetics. 2009 Sep;183(1):289-98. doi: 10.1534/genetics.109.103895. Epub 2009 Jul 13. Genetics. 2009. PMID: 19596906 Free PMC article.
PineSAP--sequence alignment and SNP identification pipeline.
Wegrzyn JL, Lee JM, Liechty J, Neale DB. Wegrzyn JL, et al. Bioinformatics. 2009 Oct 1;25(19):2609-10. doi: 10.1093/bioinformatics/btp477. Epub 2009 Aug 10. Bioinformatics. 2009. PMID: 19667082 Free PMC article.
Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine.
Chancerel E, Lepoittevin C, Le Provost G, Lin YC, Jaramillo-Correa JP, Eckert AJ, Wegrzyn JL, Zelenika D, Boland A, Frigerio JM, Chaumeil P, Garnier-Géré P, Boury C, Grivet D, González-Martínez SC, Rouzé P, Van de Peer Y, Neale DB, Cervera MT, Kremer A, Plomion C. Chancerel E, et al. Among authors: wegrzyn jl. BMC Genomics. 2011 Jul 18;12:368. doi: 10.1186/1471-2164-12-368. BMC Genomics. 2011. PMID: 21767361 Free PMC article.
99 results