Picardi E - Search Results

1

A platform independent RNA-Seq protocol for the detection of transcriptome complexity.

Calabrese C, Mangiulli M, Manzari C, Paluscio AM, Caratozzolo MF, Marzano F, Kurelac I, D'Erchia AM, D'Elia D, Licciulli F, Liuni S, Picardi E, Attimonelli M, Gasparre G, Porcelli AM, Pesole G, Sbisà E, Tullo A. Calabrese C, et al. Among authors: picardi e. BMC Genomics. 2013 Dec 5;14(1):855. doi: 10.1186/1471-2164-14-855. BMC Genomics. 2013. PMID: 24308330 Free PMC article.

2

The ADAR1 editome reveals drivers of editing-specificity for ADAR1-isoforms.

Kleinova R, Rajendra V, Leuchtenberger AF, Lo Giudice C, Vesely C, Kapoor U, Tanzer A, Derdak S, Picardi E, Jantsch MF. Kleinova R, et al. Among authors: picardi e. Nucleic Acids Res. 2023 May 22;51(9):4191-4207. doi: 10.1093/nar/gkad265. Nucleic Acids Res. 2023. PMID: 37026479 Free PMC article.

3

A novel additional group II intron distinguishes the mitochondrial rps3 gene in gymnosperms.

Regina TM, Picardi E, Lopez L, Pesole G, Quagliariello C. Regina TM, et al. Among authors: picardi e. J Mol Evol. 2005 Feb;60(2):196-206. doi: 10.1007/s00239-004-0098-4. J Mol Evol. 2005. PMID: 15785848

4

ASPicDB: a database resource for alternative splicing analysis.

Castrignanò T, D'Antonio M, Anselmo A, Carrabino D, D'Onorio De Meo A, D'Erchia AM, Licciulli F, Mangiulli M, Mignone F, Pavesi G, Picardi E, Riva A, Rizzi R, Bonizzoni P, Pesole G. Castrignanò T, et al. Among authors: picardi e. Bioinformatics. 2008 May 15;24(10):1300-4. doi: 10.1093/bioinformatics/btn113. Epub 2008 Apr 3. Bioinformatics. 2008. PMID: 18388144

5

Detecting alternative gene structures from spliced ESTs: a computational approach.

Bonizzoni P, Mauri G, Pesole G, Picardi E, Pirola Y, Rizzi R. Bonizzoni P, et al. Among authors: picardi e. J Comput Biol. 2009 Jan;16(1):43-66. doi: 10.1089/cmb.2008.0028. J Comput Biol. 2009. PMID: 19119993

6

EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data.

Picardi E, Mignone F, Pesole G. Picardi E, et al. BMC Bioinformatics. 2009 Jun 16;10 Suppl 6(Suppl 6):S10. doi: 10.1186/1471-2105-10-S6-S10. BMC Bioinformatics. 2009. PMID: 19534735 Free PMC article.

7

Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing.

Horner DS, Pavesi G, Castrignanò T, De Meo PD, Liuni S, Sammeth M, Picardi E, Pesole G. Horner DS, et al. Among authors: picardi e. Brief Bioinform. 2010 Mar;11(2):181-97. doi: 10.1093/bib/bbp046. Epub 2009 Oct 27. Brief Bioinform. 2010. PMID: 19864250 Review.

8

UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.

Grillo G, Turi A, Licciulli F, Mignone F, Liuni S, Banfi S, Gennarino VA, Horner DS, Pavesi G, Picardi E, Pesole G. Grillo G, et al. Among authors: picardi e. Nucleic Acids Res. 2010 Jan;38(Database issue):D75-80. doi: 10.1093/nar/gkp902. Epub 2009 Oct 30. Nucleic Acids Res. 2010. PMID: 19880380 Free PMC article.

9

Computational methods for ab initio and comparative gene finding.

Picardi E, Pesole G. Picardi E, et al. Methods Mol Biol. 2010;609:269-84. doi: 10.1007/978-1-60327-241-4_16. Methods Mol Biol. 2010. PMID: 20221925 Review.

10

Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing.

Picardi E, Horner DS, Chiara M, Schiavon R, Valle G, Pesole G. Picardi E, et al. Nucleic Acids Res. 2010 Aug;38(14):4755-67. doi: 10.1093/nar/gkq202. Epub 2010 Apr 12. Nucleic Acids Res. 2010. PMID: 20385587 Free PMC article.

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