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A platform independent RNA-Seq protocol for the detection of transcriptome complexity.
Calabrese C, Mangiulli M, Manzari C, Paluscio AM, Caratozzolo MF, Marzano F, Kurelac I, D'Erchia AM, D'Elia D, Licciulli F, Liuni S, Picardi E, Attimonelli M, Gasparre G, Porcelli AM, Pesole G, Sbisà E, Tullo A. Calabrese C, et al. Among authors: attimonelli m. BMC Genomics. 2013 Dec 5;14(1):855. doi: 10.1186/1471-2164-14-855. BMC Genomics. 2013. PMID: 24308330 Free PMC article.
MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing.
Calabrese C, Simone D, Diroma MA, Santorsola M, Guttà C, Gasparre G, Picardi E, Pesole G, Attimonelli M. Calabrese C, et al. Among authors: attimonelli m. Bioinformatics. 2014 Nov 1;30(21):3115-7. doi: 10.1093/bioinformatics/btu483. Epub 2014 Jul 14. Bioinformatics. 2014. PMID: 25028726 Free PMC article.
Deep sequencing unearths nuclear mitochondrial sequences under Leber's hereditary optic neuropathy-associated false heteroplasmic mitochondrial DNA variants.
Petruzzella V, Carrozzo R, Calabrese C, Dell'Aglio R, Trentadue R, Piredda R, Artuso L, Rizza T, Bianchi M, Porcelli AM, Guerriero S, Gasparre G, Attimonelli M. Petruzzella V, et al. Among authors: attimonelli m. Hum Mol Genet. 2012 Sep 1;21(17):3753-64. doi: 10.1093/hmg/dds182. Epub 2012 May 15. Hum Mol Genet. 2012. PMID: 22589247
A comprehensive characterization of mitochondrial DNA mutations in glioblastoma multiforme.
Vidone M, Clima R, Santorsola M, Calabrese C, Girolimetti G, Kurelac I, Amato LB, Iommarini L, Trevisan E, Leone M, Soffietti R, Morra I, Faccani G, Attimonelli M, Porcelli AM, Gasparre G. Vidone M, et al. Among authors: attimonelli m. Int J Biochem Cell Biol. 2015 Jun;63:46-54. doi: 10.1016/j.biocel.2015.01.027. Epub 2015 Feb 7. Int J Biochem Cell Biol. 2015. PMID: 25668474
A backtranslation method based on codon usage strategy.
Pesole G, Attimonelli M, Liuni S. Pesole G, et al. Among authors: attimonelli m. Nucleic Acids Res. 1988 Mar 11;16(5):1715-28. doi: 10.1093/nar/16.5.1715. Nucleic Acids Res. 1988. PMID: 3281142 Free PMC article.
75 results