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More compact protein globules exhibit slower folding rates.
Galzitskaya OV, Reifsnyder DC, Bogatyreva NS, Ivankov DN, Garbuzynskiy SO. Galzitskaya OV, et al. Among authors: ivankov dn. Proteins. 2008 Feb 1;70(2):329-32. doi: 10.1002/prot.21619. Proteins. 2008. PMID: 17876831
Compactness determines protein folding type.
Galzitskaya OV, Bogatyreva NS, Ivankov DN. Galzitskaya OV, et al. Among authors: ivankov dn. J Bioinform Comput Biol. 2008 Aug;6(4):667-80. doi: 10.1142/s0219720008003618. J Bioinform Comput Biol. 2008. PMID: 18763735
KineticDB: a database of protein folding kinetics.
Bogatyreva NS, Osypov AA, Ivankov DN. Bogatyreva NS, et al. Among authors: ivankov dn. Nucleic Acids Res. 2009 Jan;37(Database issue):D342-6. doi: 10.1093/nar/gkn696. Epub 2008 Oct 8. Nucleic Acids Res. 2009. PMID: 18842631 Free PMC article.
Golden triangle for folding rates of globular proteins.
Garbuzynskiy SO, Ivankov DN, Bogatyreva NS, Finkelstein AV. Garbuzynskiy SO, et al. Among authors: ivankov dn. Proc Natl Acad Sci U S A. 2013 Jan 2;110(1):147-50. doi: 10.1073/pnas.1210180110. Epub 2012 Dec 18. Proc Natl Acad Sci U S A. 2013. PMID: 23251035 Free PMC article.
How many signal peptides are there in bacteria?
Ivankov DN, Payne SH, Galperin MY, Bonissone S, Pevzner PA, Frishman D. Ivankov DN, et al. Environ Microbiol. 2013 Apr;15(4):983-90. doi: 10.1111/1462-2920.12105. Environ Microbiol. 2013. PMID: 23556536 Free PMC article.
Machine Learning: How Much Does It Tell about Protein Folding Rates?
Corrales M, Cuscó P, Usmanova DR, Chen HC, Bogatyreva NS, Filion GJ, Ivankov DN. Corrales M, et al. Among authors: ivankov dn. PLoS One. 2015 Nov 25;10(11):e0143166. doi: 10.1371/journal.pone.0143166. eCollection 2015. PLoS One. 2015. PMID: 26606303 Free PMC article.
39 results