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A physical sciences network characterization of non-tumorigenic and metastatic cells.
Physical Sciences - Oncology Centers Network; Agus DB, Alexander JF, Arap W, Ashili S, Aslan JE, Austin RH, Backman V, Bethel KJ, Bonneau R, Chen WC, Chen-Tanyolac C, Choi NC, Curley SA, Dallas M, Damania D, Davies PC, Decuzzi P, Dickinson L, Estevez-Salmeron L, Estrella V, Ferrari M, Fischbach C, Foo J, Fraley SI, Frantz C, Fuhrmann A, Gascard P, Gatenby RA, Geng Y, Gerecht S, Gillies RJ, Godin B, Grady WM, Greenfield A, Hemphill C, Hempstead BL, Hielscher A, Hillis WD, Holland EC, Ibrahim-Hashim A, Jacks T, Johnson RH, Joo A, Katz JE, Kelbauskas L, Kesselman C, King MR, Konstantopoulos K, Kraning-Rush CM, Kuhn P, Kung K, Kwee B, Lakins JN, Lambert G, Liao D, Licht JD, Liphardt JT, Liu L, Lloyd MC, Lyubimova A, Mallick P, Marko J, McCarty OJ, Meldrum DR, Michor F, Mumenthaler SM, Nandakumar V, O'Halloran TV, Oh S, Pasqualini R, Paszek MJ, Philips KG, Poultney CS, Rana K, Reinhart-King CA, Ros R, Semenza GL, Senechal P, Shuler ML, Srinivasan S, Staunton JR, Stypula Y, Subramanian H, Tlsty TD, Tormoen GW, Tseng Y, van Oudenaarden A, Verbridge SS, Wan JC, Weaver VM, Widom J, Will C, Wirtz D, Wojtkowiak J, Wu PH. Physical Sciences - Oncology Centers Network, et al. Among authors: kesselman c. Sci Rep. 2013;3:1449. doi: 10.1038/srep01449. Sci Rep. 2013. PMID: 23618955 Free PMC article.
Bayesian metamodeling of complex biological systems across varying representations.
Raveh B, Sun L, White KL, Sanyal T, Tempkin J, Zheng D, Bharath K, Singla J, Wang C, Zhao J, Li A, Graham NA, Kesselman C, Stevens RC, Sali A. Raveh B, et al. Among authors: kesselman c. Proc Natl Acad Sci U S A. 2021 Aug 31;118(35):e2104559118. doi: 10.1073/pnas.2104559118. Proc Natl Acad Sci U S A. 2021. PMID: 34453000 Free PMC article.
Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types.
Funk CC, Casella AM, Jung S, Richards MA, Rodriguez A, Shannon P, Donovan-Maiye R, Heavner B, Chard K, Xiao Y, Glusman G, Ertekin-Taner N, Golde TE, Toga A, Hood L, Van Horn JD, Kesselman C, Foster I, Madduri R, Price ND, Ament SA. Funk CC, et al. Among authors: kesselman c. Cell Rep. 2020 Aug 18;32(7):108029. doi: 10.1016/j.celrep.2020.108029. Cell Rep. 2020. PMID: 32814038 Free PMC article.
A system to build distributed multivariate models and manage disparate data sharing policies: implementation in the scalable national network for effectiveness research.
Meeker D, Jiang X, Matheny ME, Farcas C, D'Arcy M, Pearlman L, Nookala L, Day ME, Kim KK, Kim H, Boxwala A, El-Kareh R, Kuo GM, Resnic FS, Kesselman C, Ohno-Machado L. Meeker D, et al. Among authors: kesselman c. J Am Med Inform Assoc. 2015 Nov;22(6):1187-95. doi: 10.1093/jamia/ocv017. Epub 2015 Jul 3. J Am Med Inform Assoc. 2015. PMID: 26142423 Free PMC article.
pSCANNER: patient-centered Scalable National Network for Effectiveness Research.
Ohno-Machado L, Agha Z, Bell DS, Dahm L, Day ME, Doctor JN, Gabriel D, Kahlon MK, Kim KK, Hogarth M, Matheny ME, Meeker D, Nebeker JR; pSCANNER team. Ohno-Machado L, et al. J Am Med Inform Assoc. 2014 Jul-Aug;21(4):621-6. doi: 10.1136/amiajnl-2014-002751. Epub 2014 Apr 29. J Am Med Inform Assoc. 2014. PMID: 24780722 Free PMC article.
Conserved and Divergent Features of Human and Mouse Kidney Organogenesis.
Lindström NO, McMahon JA, Guo J, Tran T, Guo Q, Rutledge E, Parvez RK, Saribekyan G, Schuler RE, Liao C, Kim AD, Abdelhalim A, Ruffins SW, Thornton ME, Baskin L, Grubbs B, Kesselman C, McMahon AP. Lindström NO, et al. Among authors: kesselman c. J Am Soc Nephrol. 2018 Mar;29(3):785-805. doi: 10.1681/ASN.2017080887. Epub 2018 Feb 15. J Am Soc Nephrol. 2018. PMID: 29449453 Free PMC article.
Applications of the pipeline environment for visual informatics and genomics computations.
Dinov ID, Torri F, Macciardi F, Petrosyan P, Liu Z, Zamanyan A, Eggert P, Pierce J, Genco A, Knowles JA, Clark AP, Van Horn JD, Ames J, Kesselman C, Toga AW. Dinov ID, et al. Among authors: kesselman c. BMC Bioinformatics. 2011 Jul 26;12:304. doi: 10.1186/1471-2105-12-304. BMC Bioinformatics. 2011. PMID: 21791102 Free PMC article.
New system for archiving integrative structures.
Vallat B, Webb B, Fayazi M, Voinea S, Tangmunarunkit H, Ganesan SJ, Lawson CL, Westbrook JD, Kesselman C, Sali A, Berman HM. Vallat B, et al. Among authors: kesselman c. Acta Crystallogr D Struct Biol. 2021 Dec 1;77(Pt 12):1486-1496. doi: 10.1107/S2059798321010871. Epub 2021 Nov 29. Acta Crystallogr D Struct Biol. 2021. PMID: 34866606 Free PMC article.
37 results