Pavlopoulos GA - Search Results

1

Meander: visually exploring the structural variome using space-filling curves.

Pavlopoulos GA, Kumar P, Sifrim A, Sakai R, Lin ML, Voet T, Moreau Y, Aerts J. Pavlopoulos GA, et al. Nucleic Acids Res. 2013 Jun;41(11):e118. doi: 10.1093/nar/gkt254. Epub 2013 Apr 19. Nucleic Acids Res. 2013. PMID: 23605045 Free PMC article.

2

Medusa: A tool for exploring and clustering biological networks.

Pavlopoulos GA, Hooper SD, Sifrim A, Schneider R, Aerts J. Pavlopoulos GA, et al. BMC Res Notes. 2011 Oct 6;4:384. doi: 10.1186/1756-0500-4-384. BMC Res Notes. 2011. PMID: 21978489 Free PMC article.

3

Which clustering algorithm is better for predicting protein complexes?

Moschopoulos CN, Pavlopoulos GA, Iacucci E, Aerts J, Likothanassis S, Schneider R, Kossida S. Moschopoulos CN, et al. Among authors: pavlopoulos ga. BMC Res Notes. 2011 Dec 20;4:549. doi: 10.1186/1756-0500-4-549. BMC Res Notes. 2011. PMID: 22185599 Free PMC article.

4

Arena3D: visualizing time-driven phenotypic differences in biological systems.

Secrier M, Pavlopoulos GA, Aerts J, Schneider R. Secrier M, et al. Among authors: pavlopoulos ga. BMC Bioinformatics. 2012 Mar 22;13:45. doi: 10.1186/1471-2105-13-45. BMC Bioinformatics. 2012. PMID: 22439608 Free PMC article.

5

ReLiance: a machine learning and literature-based prioritization of receptor--ligand pairings.

Iacucci E, Tranchevent LC, Popovic D, Pavlopoulos GA, De Moor B, Schneider R, Moreau Y. Iacucci E, et al. Among authors: pavlopoulos ga. Bioinformatics. 2012 Sep 15;28(18):i569-i574. doi: 10.1093/bioinformatics/bts391. Bioinformatics. 2012. PMID: 22962483 Free PMC article.

6

Annotate-it: a Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease.

Sifrim A, Van Houdt JK, Tranchevent LC, Nowakowska B, Sakai R, Pavlopoulos GA, Devriendt K, Vermeesch JR, Moreau Y, Aerts J. Sifrim A, et al. Among authors: pavlopoulos ga. Genome Med. 2012 Sep 26;4(9):73. doi: 10.1186/gm374. eCollection 2012. Genome Med. 2012. PMID: 23013645 Free PMC article.

7

Unraveling genomic variation from next generation sequencing data.

Pavlopoulos GA, Oulas A, Iacucci E, Sifrim A, Moreau Y, Schneider R, Aerts J, Iliopoulos I. Pavlopoulos GA, et al. BioData Min. 2013 Jul 25;6(1):13. doi: 10.1186/1756-0381-6-13. BioData Min. 2013. PMID: 23885890 Free PMC article.

8

Using graph theory to analyze biological networks.

Pavlopoulos GA, Secrier M, Moschopoulos CN, Soldatos TG, Kossida S, Aerts J, Schneider R, Bagos PG. Pavlopoulos GA, et al. BioData Min. 2011 Apr 28;4:10. doi: 10.1186/1756-0381-4-10. BioData Min. 2011. PMID: 21527005 Free PMC article.

9

Biological information extraction and co-occurrence analysis.

Pavlopoulos GA, Promponas VJ, Ouzounis CA, Iliopoulos I. Pavlopoulos GA, et al. Methods Mol Biol. 2014;1159:77-92. doi: 10.1007/978-1-4939-0709-0_5. Methods Mol Biol. 2014. PMID: 24788262 Review.

10

Protein-protein interaction predictions using text mining methods.

Papanikolaou N, Pavlopoulos GA, Theodosiou T, Iliopoulos I. Papanikolaou N, et al. Among authors: pavlopoulos ga. Methods. 2015 Mar;74:47-53. doi: 10.1016/j.ymeth.2014.10.026. Epub 2014 Oct 28. Methods. 2015. PMID: 25448298 Review.

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